Dendrobium catenatum: 110104736
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Entry
110104736 CDS
T05027
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
dct
Dendrobium catenatum
Pathway
dct03013
Nucleocytoplasmic transport
dct03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110104736
03015 mRNA surveillance pathway
110104736
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dct03019
]
110104736
Enzymes [BR:
dct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
110104736
5.6.2.5 RNA 5'-3' helicase
110104736
Messenger RNA biogenesis [BR:
dct03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110104736
mRNA cycle factors
Common to processing body (P body) and stress granule
110104736
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
Helicase_RecD
UvrD-helicase
NPHP3_N
nSTAND3
PhoH
AAA_16
ATPase
SRP54
AAA_22
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
110104736
NCBI-ProteinID:
XP_020689630
LinkDB
All DBs
Position
Unknown
AA seq
1263 aa
AA seq
DB search
MAAQSVSNLYETASQPDTGGDAYTFLEFNTQGDDYDYPEFQELSQPSRSPTWRAPTAEPL
TDPSNAALQSTDPSGNNHSSSSAGSSSFSKAKAVAGSTAVDSLAAGMSGLNFEETGEDEN
YEFGKGDFTEHACRYCGVQNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEV
CLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQ
WCPLIDDRCFLPWLVKVPSEQEQLRARQVTAQQINKVEELWKTNPDASLEDLEKPGVDDE
PQSVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNATIRWDIGLNKKRIAYFVFP
KEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPIDLNHGF
SVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVELQVVRNTLPRRFGAPGLP
ELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQ
LAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDASEKSELHKLQLLKDEQGEL
SSSDEKKFKALKRATEREILQSADVICCTCVGAGDPRLSNFRFRQVLIDESTQATEPECL
IPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGHKPFRLQVQYRMHPS
LSEFPSNSFYEGTLQNGVTINERQSTGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNR
TEAANVEKIVTTFLRSGVVPCQIGVITPYEGQRAYIVNYMSRNGSLRQQLYKEIEVASVD
SFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNC
LLTHYKERECLVEGPLNNLKQSMVQFQKPKKKLYNDRRLFFGVGPSLMAGDNLSPVSSSS
PNADKKGGRMKGHSYVPFAPPNGTLKPGAHPAGYPLSRIPLPPFPTGPHSQPYAIPTRGA
VHGPIGAMPQVPQTGNRGFGAVRGNAGGPIGGHLSPQHNSQHPLSSFGSGFNFPAVDNLN
SQPSIGAPLSQTGLMTQAPVQGLTQTFRDGFSIGGMSQDYGDDFKSQGSHVAYNGADFST
QASQSGYGLDYASQGPQAGFPDYLNQNTQPGYTNIGTGNGFISHDYLQHGSQGLFTQSGF
NNPSQNDSSHSHFGAPGPLQSQGHMNPIYSQPFTQYNAQPLNVQQPSQQQSQSLSSQKHH
YNG
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcagtcggtcagcaatctttacgagacggcatcgcagccggacactggcggg
gatgcctacaccttcctggagttcaacacgcaaggagacgactacgactaccccgagttc
caagagctgtcccagccgagtaggtcaccgacatggcgggcaccgactgcggaacccctg
accgatccctcaaacgctgcactccagtccaccgatccaagtgggaataatcattcttcg
tcctctgcgggatcttcgtcgttcagcaaggcgaaggcagtagcgggttcgacggccgtg
gattcactagcggcgggaatgagcggcctcaactttgaggagactggtgaggatgagaac
tacgagtttgggaaaggggatttcaccgagcacgcgtgcaggtactgcggggtacagaat
ccagcttgcgttgttaggtgcaatgttccatcgtgccggaaatggttctgcaactcgagg
ggaaacacgtctggatctcacatcgttaatcatttggtacgagcaaaacataaggaagtt
tgtctccataaggacagcccattgggagaaacaatacttgagtgctacaattgtggctgt
cgcaatgtttttttacttggatttatttctgccaaaacggagagtgttgttgttctgttg
tgtagggaaccttgccttagtgtcaatgctctgaaagacatgaattgggatctcagtcag
tggtgtcctctgattgatgatagatgttttcttccatggttggttaaggttccttctgag
caggagcagctcagggcacgacaggttacagctcaacaaattaacaaagtggaggagctt
tggaagacaaaccctgatgcttccttagaagatcttgagaaacctggagtagatgatgag
ccgcagtctgtggctttaaagtatgaagatgcataccagtatcaaaatgtatttgctccg
ctaattaagttggaagctgattatgataagatgatgaaggagtcacagagtaaagacaac
gcaaccatcagatgggatattggccttaacaagaagcgaatagcttattttgtctttccc
aaggaagacaatgaactaaggcttgttcccggtgatgagttaagattgcggtattctggc
gatgcagctcatcctgcgtggcaatccgttggacatgtgataaagcttactgctcaggag
gaggttgcgcttgaactccgtgctagtcagggagttcctattgatttgaaccatggattt
agtgttgattttgtctggaaaagcaccagcttcgatagaatgcaaggggcaatgaaaacc
tttgctgtggatgaaacaagtgttagcggatatatctatcatcaccttcttggacatgaa
gttgaactccaagttgtccgtaatactctaccccgtcgttttggtgctccaggcctccca
gagttgaatgcctctcaggtttttgctgttaagagtgttcttcaaaaacctattagttta
atacaaggcccgcctggaactggaaaaacagttacatctgctgcaattgtgtaccacatg
gctaaacaaggacaaggacaggtccttgtctgtgctccaagtaatgtggctgttgaccaa
ctagctgagaagataagtgcaactgggctaaaggttgttaggctctgtgctaaatcaaga
gaggccgttagctctcccgttgagcacctaactcttcattatcaggtccgtcatctggat
gcatctgaaaagagtgaacttcataagcttcaactattgaaagatgaacaaggtgaatta
tcgagtagtgacgaaaagaagtttaaggcattgaaacgagccacagaaagagagatactt
caaagtgctgatgttatttgttgcacttgtgttggtgctggtgatcctcgcttgtcaaac
ttccgctttagacaggttcttattgatgaatctactcaagcaactgaaccagaatgtcta
ataccattagttcttggagtcaagcaggttgttcttgttggagatcattgccagcttggt
cctgttatcatgtgtaagaaagctgctcgtgctgggttagcacaatctttgtttgagcgt
cttgtgcttcttggacataagccattcagactgcaggtccagtaccgcatgcatccatct
ctatctgagttcccctctaatagcttctatgagggtacccttcaaaatggagttacaata
aatgaaagacaatcaactggcattgacttcccttggcctgtccctaaccgccctatgttt
ttttatgttcagatgggacaagaggaaataagtgcaagtgggacatcttatctgaataga
acagaagctgcaaatgtggagaaaattgttactacatttttgagaagtggtgttgtacct
tgtcagattggagttataacaccatatgaaggtcaaagagcatatattgtgaactatatg
tcaaggaatggctctcttaggcaacaactttataaggaaattgaggttgcaagtgttgac
tcattccaaggtagagaaaaggattacataattttgtcttgtgtgaggagcaatgaacac
cagggtattggttttcttaatgacccacgtagactgaatgtggcactgactcgagctcgc
tatggcattgttatattgggaaatcccaaggttctgagtaagcaaccactttggaattgt
ttgcttacacattacaaggaacgtgagtgtcttgtagaaggacctcttaataatctcaaa
cagagcatggtacaattccagaagccaaagaagaagttgtacaacgaccgcaggcttttc
tttggagttggtcctagtcttatggctggtgataatttatctcctgttagttcctcaagc
ccaaatgctgacaagaaaggtggacggatgaaaggtcattcttacgtgccatttgcgcca
ccaaatggtactcttaaacccggagctcacccagcgggatatcccttgtctcgaatccct
cttcctcctttccctactggcccccactcacagccatatgctatcccaactcgtggagct
gtacatggaccaattggtgccatgccccaggtaccacagactgggaatagaggctttgga
gctgttcgtggcaatgctggtggtcctattggaggacatctttcgccgcagcataactcg
cagcaccctttgagtagctttggttctggattcaattttcctgctgtggacaatctgaac
agccagccctctattggtgccccattgtctcaaacaggactaatgacacaggcaccagtt
caaggccttacacaaacttttcgtgatggattttctattggtggcatgtctcaggattat
ggtgatgatttcaaaagccaaggttcacacgttgcttataatggtgcagacttttctact
caggcttctcaaagtggatacggccttgactatgcttcccaaggccctcaagctggattc
ccagactacctaaatcagaatacccaaccaggatataccaatattggcactgggaacgga
ttcatctctcatgattacttacagcatggatctcaaggactatttacacagtcaggattc
aataatccttctcaaaacgattcttctcatagccattttggtgcacctggtccactacag
tcacagggccatatgaatcctatttattcccaaccattcacccaatacaatgctcagcct
ttaaatgtgcagcagccttcacagcaacagagtcagagcctatccagccaaaaacatcat
tataatggctga
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integrated database retrieval system
