Dendrobium catenatum: 110105533
Help
Entry
110105533 CDS
T05027
Name
(RefSeq) uncharacterized protein LOC110105533
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
dct
Dendrobium catenatum
Pathway
dct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110105533
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dct03000
]
110105533
03019 Messenger RNA biogenesis [BR:
dct03019
]
110105533
04121 Ubiquitin system [BR:
dct04121
]
110105533
Enzymes [BR:
dct01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
110105533
Transcription factors [BR:
dct03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
110105533
Messenger RNA biogenesis [BR:
dct03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110105533
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110105533
Ubiquitin system [BR:
dct04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
110105533
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
Nup35_RRM_2
zf-UDP
Motif
Other DBs
NCBI-GeneID:
110105533
NCBI-ProteinID:
XP_028556774
LinkDB
All DBs
Position
Unknown
AA seq
1072 aa
AA seq
DB search
MAPIPSRMTSTSDDGERVCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMEMAEKEKTE
GRCPACRTPYDKERIVGMAVNCERLVAEANGGKRQRSQKGKTKVSAEARKHLSTVRVVQR
NLVYIIGLPADLCDESLLERKEYFGQYGEILKVSISRPASTTNQQASNNNVYITYAREED
AVRCIQAVHNYLLDGKRLRACFGTTKYCHAWLRNMICSNPDCLYLHDIGNQEDSFTKDEV
VSAYTRSVVLQVPSSNLQRRAGSLLPPAEDWCNLQTVSDKHSVNNASKTTEAQATVSNVS
AGWLAILPAASSWGSRASNGLTPSTSTVCSQSSEKQKVETKSHSSTHSSISIGAEDVSPS
WHDNEVTVSIAEEGHSNPLPSEPSKFQPGKVSPTTASDLTFVSLHSDANGFGDSAWDDDP
VIASKLVEETPSSSSAIILEKWSTVDSECQISGVGLQTTSASGKTSCSSSQVCLAGPTSP
VSQDKDGIFSASRKKIDAVNLMGEESLNKQSCSSSARPTDVNQHAHTSCLGSSAPYMDKK
SKPNPVHNHENNAFVGSTMLRSQLSTKGKNGSEDLGNLISVPSFEVTVSSNAVSTSSSNL
ELPMMGFESTGDGDKDISPAIIGIKQLGSADTIQISRSPHFTHSLSNCKHQPCSSLNDLD
ANTNSSSGESIMPINAVFNQTSSNEGNKVDLSNMYKPEISLDSVVVSSNRGFRFLDSFND
SSRSEKDTTVNTKESNIITDILSLDFDQWNESMSPADDLSRMLSDNGGQNSSVALSRSWI
SQNINQSRFSFARQEDPVKSVEPSISDTEHMKRGIMLKGSRANGFQNGSTGDDSYGYCAT
QSLDRPAGVSRIKMLAPPGFSVPSGAPPPGFSDQDRYEHNLMATVPENHLHGNSLFRNQY
EVHPTENSVDLEFIDPAIMAVGKGHMPLGTSINNGLGSAFPERFRSEGDLIDQLLMKRSI
SYQNMRISDPVRENFLPLNDSYAMSYHFPQNYSSLSPLVQLSLQQPRTSPISNTHWDGWS
NKQSGLNIDFTFQVQEMYTTEHLACNCCLMSFIIIFFISIPTMDLTTRSLLN
NT seq
3219 nt
NT seq
+upstream
nt +downstream
nt
atggcaccgattccctctcgaatgacaagtacgagcgacgatggagagagagtttgcccc
ctctgtgcggaggagatggacctcacggaccagcaattaaaaccatgcaaatgtggatac
gagatttgtgtttggtgctggcatcatattatggaaatggctgagaaagagaagacagag
ggccggtgtcctgcatgccgcactccatatgataaggagagaattgtaggaatggctgtt
aactgtgaaaggttggtggcagaagcgaatggtgggaaaagacaaagatcccaaaagggg
aaaaccaaagtatcagctgaagccaggaagcatcttagcacagttcgggtggtacaaagg
aatcttgtatacataattggattacctgctgacttatgtgatgaaagcctgcttgagcgc
aaggaatatttcggtcagtatggagaaattttgaaggtgtcaatttcccgtccagctagt
acaacaaaccaacaggcatctaataacaatgtatatattacttatgccagagaagaagat
gccgttagatgtattcaagctgtacacaactatttattagatggtaaacgtttaagagct
tgctttggcactactaagtattgtcatgcctggttgagaaacatgatttgcagcaatcca
gattgtttatatttgcatgacataggcaaccaagaggatagcttcaccaaggatgaagtt
gtttcagcatatacgaggagtgttgtcttgcaggttccttcctctaatttgcaaagacgt
gcaggtagtttattgcctcctgcagaagattggtgcaacttgcaaacagtctcagacaaa
cactcagttaataatgcctcaaaaactactgaagctcaggccacagtttcaaatgttagt
gctggatggcttgctattctgccagcagcttcctcttggggttcacgtgcttcaaatggc
ttgacgccatctacaagcacagtatgctcccaaagttcagaaaaacaaaaggttgaaacc
aaaagccattcttctacccattcttcaattagcataggcgcagaggatgtgtctccttca
tggcatgacaatgaagttacagtgtcaatagctgaggaagggcatagcaatcctcttcca
tcagaaccttctaaatttcaacctggaaaggtctcccccacaactgcatcagatctgaca
ttcgtttctcttcattctgatgctaacggttttggagattcagcatgggatgatgatcct
gttatagcatctaaacttgtcgaggaaaccccgagcagttctagtgcaattatactggaa
aaatggtcaactgtagatagtgaatgtcaaatatcaggagtgggcctgcaaacaacctct
gcttcaggtaaaacaagttgtagttcatcacaagtatgtctagcgggccctacttcccca
gtttctcaagacaaggatggcatcttctctgcatccaggaagaaaatagatgctgtgaat
ttgatgggagaggaaagtttgaacaaacaatcttgtagtagttctgctaggccaacagat
gttaatcaacatgcacatacttcttgcctgggttcctcagctccatatatggataaaaaa
agtaaacccaacccagttcacaatcatgaaaataatgcttttgtgggttctactatgctg
agaagccaactttctacaaaagggaaaaatggttctgaagatcttggaaatttaatttca
gttccatcctttgaagtaactgtctcctcaaatgcagtttccacatccagttcaaattta
gagttaccaatgatgggttttgaatctactggagatggggataaagatatttctccagct
ataattggtattaaacaattaggctctgctgacaccattcaaatatcacgctcacctcat
tttactcactctcttagtaattgcaaacatcagccatgcagtagtttaaatgaccttgat
gcaaataccaactcttcatctggagagtctatcatgccgataaatgcagtttttaatcag
acctcttcaaatgagggcaataaagtagaccttagcaatatgtacaaacctgaaatctct
ttagacagtgttgtggttagctccaacagaggtttcagatttttggatagttttaatgac
tcaagtagaagtgagaaagatacaactgtaaatactaaagagagcaacatcattacagat
atattatcattagactttgaccaatggaatgagtcaatgtcaccagctgatgatttgtct
aggatgctcagtgacaatgggggccaaaattcttctgttgcgctttcaagatcatggatt
tcacaaaatatcaatcaatctaggttttcctttgctagacaagaggatccagtcaaatca
gttgaaccttctatcagcgatactgaacatatgaagagaggtattatgttaaaaggttca
cgtgccaatggttttcaaaatggttccacaggcgacgattcttatggctattgtgcaacg
caatctttggataggcctgcaggtgtttcaaggatcaaaatgttggctccacctggattc
tcagtgccaagcggagcacctccccctgggttttctgatcaagatcgttacgaacacaat
ttaatggcaacagttccagagaatcatctacatggtaattctctatttaggaatcagtat
gaagttcatccaactgaaaattctgttgatttggaatttattgacccagcaataatggct
gttggtaaaggccatatgccacttggaaccagtattaacaatggtttgggttctgctttt
cctgaacggttcagatctgagggtgacctgatagatcagctacttatgaagcgatctatt
tcttatcaaaatatgagaatttctgaccctgtaagggaaaatttcttgcctcttaatgat
tcgtatgccatgtcctatcacttcccacaaaactatagcagtttatctcctttggtacag
ctgtcactgcagcagcctagaacctcacctatctcgaatacccactgggatggttggagt
aataagcaatctgggctgaatatagatttcacattccaagttcaggaaatgtatacaaca
gagcatttggcatgtaattgttgtttgatgtctttcatcattatatttttcataagcatt
ccaacaatggacttgactactagaagcttgttgaactaa
DBGET
integrated database retrieval system
