Dendrobium catenatum: 110105937
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Entry
110105937 CDS
T05027
Name
(RefSeq) uncharacterized protein LOC110105937
KO
K06100
symplekin
Organism
dct
Dendrobium catenatum
Pathway
dct03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110105937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dct03021
]
110105937
03019 Messenger RNA biogenesis [BR:
dct03019
]
110105937
Transcription machinery [BR:
dct03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110105937
Messenger RNA biogenesis [BR:
dct03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
110105937
U7-dependent histone pre-mRNA processing factors
110105937
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
110105937
NCBI-ProteinID:
XP_020691290
LinkDB
All DBs
Position
Unknown
AA seq
1278 aa
AA seq
DB search
MGSKLAEIQPRETQVYMDLDREGLNDGRGLASHRIFLEFERVLKELGRKVTEDSLVLLPK
LLSFLKHDDPFVVKRSITSGTSLFCAVLVEIAVQLNKSDRPERWLEKMWSWMLQFKDAVF
GIVLEPGSVGTKVLAVKFLETCVLTLTSDEHVGDAPYEEGKERDFNVSWLKKDHPVFNPA
ALAIEANNSLKLLLDLLRSADSLQGSLTIAIMNCLATIARKRPLHYDGILAALLAFTPND
HTLKGGHVASVRYSLRTAFLGFLKCNHPSAIESRDKLVRWLRSISPGEAVEQVIRQVEKM
SRMERMSRDVQVNKDDELSGQISTSKDSARIWSGTQFDDISSISEEMPQKKMRFSSTYIS
IQPVDKPSDMMDTPDSASDFPLKDDLSPVEKMIAMIGALLAEGERGSESLEILISNIHAD
LLADIVLETMKHLPKNSLSSSGINGNSRVSSQMSPRGSLSHEGPSSGTVHGQPPISSQNE
STKSVSSEITMPTLDMPALSNILADFKRDPRRDPRRFDPRLAVATTVQSLPLNSEKDSDS
KIDLYQSKSNLISSLEDKAACPLSSFASKDEDKLLDSTVDSNTNQLSSNEALEVKDTVME
VESLTEAQIPLKSPISTMHAVELELSVSVPSDATVSQSIDDNPLEPDQYSSPVSTTLTSE
DASHDLPMLPVYVELTTEQKKELSKLAIARIFKDCKKVCAVATGQPWLPLLARLVAQSDA
DGDMVSLLQSHIISDCDRLKGHELTMLVLYHIHAIMISESNESSNIAASNYEKFLLSSAK
GLIDSFSASDKSFSRLLGEAPFLPDSALRFLEDVCYSSVYDHLKKDAFDGDRATQGLGTL
WSLILSRPSNRLACLEIALKCAVHAKEEVRTKAVRLVVNKLYILQYASEHIESFAKKMLL
SVVNHQVSEAESQCTSSSGQRTEVCNHESSFGGSQNSENGASESETMRDNPGYSQNVVLM
SSSQAQQKTSLFFALCSKKPSLFKLIFDIYGRAPKAVKQAIHRHVPILLRNVGESSNELQ
HIISNPPEGCENLITLVLQVITEESTADADLITAVKHLYETRMKDAAILIPILSSLSKDE
VLPIFPRLVDLSIEKFQAALACILQGSAHTGPALTPVEVLNAIHDINPDKDGVALKKITD
ACTACFEQRTVFTQQVLEKSLNSLVDRVPLPLLLMRTVIQTIDAFPIMVEFMMGILSRLV
SRQIWRMPKLWVGFLKCASQTMPHSFNVLLQLPTPQLEGALNKYPEMRIPLASFANQPNN
RSLLSRQTLGILGLSPEQ
NT seq
3837 nt
NT seq
+upstream
nt +downstream
nt
atgggttcgaaactcgcagaaattcaaccgagggaaactcaagtttacatggatttggat
agagaaggccttaatgatggaagaggtctagcaagccatagaatattcttggagtttgag
agggtcttgaaggagcttggtcggaaagtcacagaagattcactagtcttgctgccgaaa
ttgctgtcatttttaaaacatgatgatccttttgttgttaaacgatcaataacctctgga
acaagtttattttgtgctgttctagttgaaatagcagtccagcttaataaatccgatagg
cctgaaaggtggctcgaaaaaatgtggtcttggatgctacaattcaaggatgcagttttt
ggcattgttttggagcctggatctgtcggaacaaaggtgcttgctgtaaaatttcttgaa
acttgcgttttaaccttgacatctgatgagcatgtaggtgatgctccttatgaggaagga
aaagagcgggacttcaatgtctcatggttaaagaaggatcatcctgtttttaacccagca
gcacttgcgatagaagcaaacaattctcttaagctcttactagatttattgcgctcagct
gattctcttcagggttcattgacaatcgctataatgaactgtcttgcaacaattgcaagg
aaaaggccccttcactacgatggcattttggcagccttacttgcttttactccaaatgat
catactttaaagggtgggcacgttgcaagtgttagatattcactgaggactgctttttta
ggattcctgaagtgtaatcatccatcagctattgagtccagggacaagctagtgaggtgg
ttacgttccataagtcctggggaagcagtagagcaagttattcgacaagtcgaaaaaatg
tcaagaatggagcgcatgtctcgggatgttcaagttaacaaggatgacgaattatcggga
caaatatcaacatctaaggattcagctaggatatggtctgggacgcagtttgatgacatt
tcttccatttctgaggaaatgccacaaaagaagatgaggtttagttcaacttatatctcc
attcagcctgttgataaaccatctgatatgatggatactccagattctgcaagcgatttt
cctttaaaagatgatttatctcctgttgaaaagatgattgccatgattggtgctctgttg
gcagaaggggaaagaggttccgagtcccttgaaattctcatttcaaatattcatgcagat
ctcttagctgatatagtcttagaaacaatgaaacatttaccaaagaattcactttcctca
tctggaatcaacggaaactcacgtgtgagttctcagatgtctccaagaggttctttgtca
catgaaggaccttcctctggtacagtacacggccagcctcctatttcatcccaaaatgaa
tcaactaaatcagtgtctagtgaaatcactatgccaacactggatatgcctgccctttct
aacattcttgccgactttaagcgtgaccctagaagggatcctcgtcggtttgatccccgt
cttgctgtagcaacaactgtgcagtctttaccattgaactctgagaaagatagtgactca
aaaattgatctttatcaatctaaaagtaatctgatttcttcattggaagacaaggctgca
tgccctctttcttcttttgcatcaaaggatgaggacaaactcctggatagtacagttgat
tctaatactaatcagttatcttccaatgaagctttagaagttaaggatactgttatggaa
gtagaatcattaacagaggctcaaatacctctcaaatcaccaatttccactatgcatgct
gttgagctagaactgtcagtttctgtcccttcagacgctactgtaagtcaaagtattgat
gataatcctttggagccggatcaatattcttcacctgtgtccacaacactgacatctgaa
gacgcttctcatgatttacccatgcttccagtttatgttgagttaacaactgagcagaaa
aaggaattatccaaattagcgattgcaaggattttcaaagattgcaaaaaagtatgcgct
gttgcaactggtcaaccctggttacctttgttggcccgcctagttgctcagagtgatgct
gatggtgatatggtttcattgttgcaaagtcatatcatttcagattgtgatcgtttaaag
ggacatgagctcacaatgcttgtgctataccatattcatgctattatgatatctgaatca
aatgaaagttccaacattgctgcgagtaattatgagaaatttctactatctagtgcaaaa
ggccttattgattcattttcagcttcagataagtcctttagtagacttcttggagaagct
ccatttttgcccgactctgcattgagatttttggaggatgtttgctactcaagtgtttat
gatcaccttaagaaagatgcttttgatggcgatcgagctactcagggtttgggtacttta
tggagtctaattttgagtcgtccatctaatcgtttagcttgcttggagattgctttgaag
tgtgccgttcatgctaaagaggaagttagaacgaaagctgttcggctggtggtaaataag
ctctatattctgcaatatgcctcagaacacattgaaagctttgctaaaaaaatgctgtta
tctgttgtcaatcatcaagtttcagaggcagagtcccaatgtaccagttctagtggacag
agaactgaagtatgtaatcatgaatcatcctttggcggttcccagaattctgaaaatggg
gcttctgaaagtgaaaccatgagagacaacccaggttattcacaaaatgttgtgttgatg
tcctcgtctcaagctcagcagaaaacgtcattgttttttgctctctgttcaaagaaacca
agtctctttaaacttatttttgatatttatggaagagctccaaaggctgtcaagcaggcc
attcatcggcatgttcccatccttttgagaaatgtaggggaatcatcaaatgagctacag
catataatttccaatccacctgaaggatgtgaaaatcttattactctggtgttgcaagtc
atcactgaagaatctacagctgatgctgatctaattactgctgttaagcatttatatgag
actagaatgaaggatgctgctattttgatcccaatactttcttctctttcaaaagatgag
gttttgccaatatttccaaggctggttgatctttcaatagagaagtttcaagctgcctta
gcttgcattcttcagggttcagcacatacaggcccagctttaacccctgttgaagtattg
aatgcaattcatgacatcaatcctgataaggatggggttgctctaaagaagataacggat
gcttgtacggcttgttttgagcaacgaacagttttcacccagcaagttctagaaaaatcc
ttgaacagcttggttgatagagtgcctcttcctctgcttttgatgagaacagttattcaa
acaattgacgctttccctattatggttgaattcatgatgggaattctatctcgtttggtt
agtcgacagatttggaggatgccaaagctatgggttggatttttgaaatgtgcttctcag
acaatgccgcattcatttaatgtcctgctgcagctacccaccccacaacttgagggtgcc
ttaaataaatatcctgaaatgagaattcctctagctagttttgccaatcagcctaacaat
agaagcttattgtcaaggcaaactcttgggatactaggcctcagtcctgagcaataa
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integrated database retrieval system
