Dendrobium catenatum: 110106686
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Entry
110106686 CDS
T05027
Name
(RefSeq) pre-mRNA-processing factor 19 isoform X1
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
dct
Dendrobium catenatum
Pathway
dct03040
Spliceosome
dct04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110106686
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
110106686
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dct03041
]
110106686
04121 Ubiquitin system [BR:
dct04121
]
110106686
03400 DNA repair and recombination proteins [BR:
dct03400
]
110106686
Enzymes [BR:
dct01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
110106686
Spliceosome [BR:
dct03041
]
Complex B
Other components
Prp19 complex
110106686
Complex C
Prp19-CDC5 complex
110106686
Ubiquitin system [BR:
dct04121
]
Ubiquitin ligases (E3)
U-box type E3
110106686
DNA repair and recombination proteins [BR:
dct03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
110106686
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
Prp19
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
WD40_CDC20-Fz
WDR55
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_Vps41
PROPPIN
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_DCAF12
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_HPS5
U-box
NBCH_WD40
Beta-prop_DCAF4
WD40_like
PEP5_VPS11_N
Beta-prop_SPT8
RMC1_N
zf-Nse
PAS_11
PUMA_CC
Motif
Other DBs
NCBI-GeneID:
110106686
NCBI-ProteinID:
XP_020692317
LinkDB
All DBs
Position
Unknown
AA seq
527 aa
AA seq
DB search
MICAISGEVPEDPVISKKSGLLYERRLIERHIADYGKCPVTKEELSMDDILPVKINKVVK
PRPLQAASIPGLLGMFQNEWDALMLSSFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARVLLAQAERQIPLSSAVIANDNAIVSNGKRAAEDEFGPDGKRIRPGITSAIITEL
TECNSMLSGQRKKRQVPPTLASIDALERYTQVSSHPLHRTNKPGILTVDIHPSKDLIATG
GVDTNAVLYDRSSGQILCTLTGHSKKVTSVKFVPKDELFVTASGDKTVRVWQGTDDGNYS
CRHILKDHTADVQSVTVHATHKYCVTASLDNTWCFYDLASGTCLTQVGEPSGQEGYTSAA
FHPDGLILGTGTSEALVRIWDVKSQSNVAKFDGHMGSVTAMSFSENGYFLATAALDGVKL
WDLRKLKNFRSFAPYDSNTSTNAVEFDYSGSYLAIAGSDVRVYQVANVKLEWNLIKSFPD
LSGTGKVTSVKFGTDAKYLAVGSMDRNLRIFGLPEGELEEPSRSMDE
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgatctgcgcgatttccggcgaagtgccggaggaccccgtgatatccaagaagtccggg
cttttgtatgagcgcaggctgatcgaacgccatattgctgattatggaaagtgccctgtt
acgaaggaggagctttcgatggatgacatcttacctgtgaagattaataaggttgtgaag
cctagacctttgcaggctgcaagtatcccaggattgcttggcatgtttcagaatgaatgg
gatgctttaatgttatctagttttgccttggagcagcagttgcataccgcaaggcaagaa
cttagtcatgccttgtatcagcatgatgctgcttgccgtgtaatagcaaggttaaaaaag
gaaagggatgaagcaagggtgcttttagctcaagctgagagacaaattcctttatcatct
gctgttattgcaaatgacaatgccattgttagcaatgggaaaagagctgcagaggatgaa
tttggtcctgacgggaaaagaattcgtccgggcatcacttctgccattatcactgaactt
accgagtgtaattctatgctgtcgggacagaggaaaaagcgtcaggttccaccaacattg
gcatccattgatgctttggaaagatatactcaagtatccagccatccccttcatcggact
aacaagccaggcattctcacggtggatattcatccttcaaaggatctcattgcaacagga
ggagttgatacaaatgcagtactttatgatcggtcttcaggtcagatcttatgtaccctc
accggacactccaaaaaggtaacaagcgtgaaatttgtgccaaaggatgagctttttgtg
actgcatctggagacaagactgttcgtgtttggcaagggactgatgatgggaattacagt
tgcagacacatcctgaaggaccatactgctgatgtccaatctgtgacggtccatgccact
cataaatactgtgttacagcctccttagacaacacttggtgtttctatgatctggcctcc
ggaacttgcttaactcaggttggtgaaccctctggacaggaaggctatacttctgctgcc
ttccatcctgatggacttatccttggaactggcacttctgaagccctagttagaatatgg
gatgtgaaatctcagtcaaatgttgccaagtttgatggacatatgggatctgtaacagcc
atgtcattttctgaaaatggttattttcttgcgactgcagccctagatggtgtcaagctt
tgggatcttaggaaattgaaaaatttcagatcatttgcaccttatgactctaacacttca
acaaacgctgttgaattcgactacagtgggagttatcttgctattgcgggttctgatgta
agggtttaccaagtggcaaatgtaaaattggagtggaatctcatcaaatctttccctgat
ttgtcaggaacaggtaaagtgacaagcgtgaagtttggaacggatgccaagtacttggcc
gttggctccatggacagaaacctcaggatctttggccttccagagggcgaactagaagag
cctagtaggtccatggacgagtaa
DBGET
integrated database retrieval system
