Dendrobium catenatum: 110107298
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Entry
110107298 CDS
T05027
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X1
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
dct
Dendrobium catenatum
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dct03041
]
110107298
Enzymes [BR:
dct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110107298
Spliceosome [BR:
dct03041
]
Complex C
Other components
Complex C specific factors
110107298
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
AAA_30
AAA_7
nSTAND3
Cas3-like_C_2
ResIII
SRP54
AAA_16
T2SSE
RVP_2
Motif
Other DBs
NCBI-GeneID:
110107298
NCBI-ProteinID:
XP_020693175
LinkDB
All DBs
Position
Unknown
AA seq
697 aa
AA seq
DB search
MSQFWKPGTERPRPCLVDDEEGGVLFYSTPPPSSSYGYASLEKQRQRLPVFKYRTAILYL
VEYHSTVIIVGETGSGKTTQIPQYLKEAGWAEGGRLIACTQPRRLAVQSVASRVAEEMGV
KIGEEVGYTIRFEDKTVQGVTKIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTD
MLLGLLKKVQRRRPELRLIISSATIEAESMSNFFRTRKKNDGHATDDNNLKMEPSILSVE
GKGYPVEIHYVQEPVSNYLQSAVDTVLLIHEKETVGDVLVFLTGQEEIDAAVQLLVEKAS
DKTSHFSGLLVLPLYSGLSRSDQDLIFSQTPKGKRKVVISTNIAETSLTLEGVVYVVDSG
FSKQRFYNPISDIENLVVAPISKASAKQRAGRAGRLRAGKCFRLYTEDYFVKEMPAEGIP
EMQRSNLVSSVIQLKALGIDNILGFDWLASPPPEAMIRALEVLYSLGILDEDAKLTTPSG
FQVAEIPLDPMVSKMIIAADTLGCSEEILTIAAVLSVQSIWVSARGKHKGLDEVKLRFAA
AEGDHVTHLNVYKGFLQSGKSSQWCYKNYINYHAMKKVVDTREQLCRLVRRLGIVLKSCQ
GDTQTIRKAILAGFFSHASQLEEYSQNGMYKTVRNSQEVYIHPSSVLFRVNPKWVVYHSL
VSTDKHYMHNVIAIDPSWLIEAAPHFYQLKRPNPAIF
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgtctcagttctggaagccgggaaccgagcggcctcggccgtgtcttgtcgatgatgag
gaaggtggcgtcctcttctactcgacccctcctccatcttcaagctatggttacgccagc
ttggaaaagcagagacaaagactccctgtgttcaagtatcggactgccatcctttatctg
gtggagtaccactccaccgtcataatcgttggcgagactggtagcggaaagaccacccaa
atccctcagtatctaaaagaggcaggttgggctgagggtggcagactcatagcttgcacg
cagccaaggcggttggctgtacagtcagttgcttcacgagtagcagaagagatgggtgtt
aaaattggagaagaggttggatatacaatccgttttgaagataaaactgttcagggtgta
accaagattaagtttcttactgatggggttttgctaagagaaatgatggacgacccacta
ctgaccaagtacagtgtcataatggtagatgaggctcatgaaagatctatctccactgac
atgctactaggccttttgaagaaggtacaacgacgtagacctgagctacgtttaataata
tcatccgcaacaatagaggcagagtccatgtcaaacttttttcgaactagaaagaagaat
gatggacatgctaccgacgataataatcttaagatggaaccttccattctttcagttgaa
ggaaaagggtatccagtggaaattcattatgtccaggagcctgtctctaattatttgcaa
tctgctgtggacacggtgcttttaattcatgagaaggagacagttggtgatgttctagtg
tttcttacaggtcaagaagaaattgatgctgctgtgcaactacttgtagagaaggcaagc
gataaaacaagccacttttctgggctgttggttttgccactttactctgggctttcacga
tcagatcaggacctcatattttctcagactccaaagggaaagaggaaagttgttatatct
accaatattgctgagacatcacttacattagagggggtggtttatgttgtggacagtggg
ttctcaaagcagcgcttttataaccctatctctgacattgaaaacttggtggtggcgcca
atttcgaaagcttctgcaaaacaacgagctggaagagctggaagactacgagctggaaag
tgctttaggttatatactgaagattattttgtcaaagaaatgcctgcagaaggaattcct
gaaatgcaaaggtcaaatcttgtttcttctgtaatacaactaaaggctctgggaattgat
aatatcttgggctttgattggttagcttctcctccaccggaggcaatgataagagcgctt
gaggtcctctactctcttgggattcttgatgaagacgcaaaactcacaacaccaagtgga
tttcaagttgctgagataccactagatcccatggtctccaagatgatcatagcagcggac
acgcttggttgttcagaggagattcttactattgcagcagttctttctgttcagtctatc
tgggtttccgctagaggaaagcacaaaggccttgatgaagtgaagttgagatttgctgct
gctgagggtgatcatgtaactcatttgaatgtgtataaaggatttctccagtctggaaag
tcttcacaatggtgttacaaaaactacataaactaccatgccatgaaaaaggttgttgat
acaagggaacaactttgcaggctagtcaggcggcttggcatagttctgaaatcttgccaa
ggggatacacagacaataagaaaagccattcttgctggttttttctctcatgccagtcag
ttggaagaatacagtcaaaatggcatgtacaaaacagtcagaaattcccaagaagtgtat
atccatccatcatctgtactatttagagttaatcctaagtgggtggtctaccattctctg
gtttccactgacaagcattatatgcataatgtcattgccattgatccatcttggctcatt
gaagctgcaccacatttctaccaactaaagagaccaaatccagcaatcttctga
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