Dendrobium catenatum: 110107830
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Entry
110107830 CDS
T05027
Name
(RefSeq) uncharacterized protein LOC110107830 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
dct
Dendrobium catenatum
Pathway
dct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110107830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dct03000
]
110107830
03019 Messenger RNA biogenesis [BR:
dct03019
]
110107830
04121 Ubiquitin system [BR:
dct04121
]
110107830
Enzymes [BR:
dct01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
110107830
Transcription factors [BR:
dct03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
110107830
Messenger RNA biogenesis [BR:
dct03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110107830
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110107830
Ubiquitin system [BR:
dct04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
110107830
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
Baculo_IE-1
RRM_1
zf-UDP
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
110107830
NCBI-ProteinID:
XP_020693896
LinkDB
All DBs
Position
Unknown
AA seq
924 aa
AA seq
DB search
MSDNGDKACPLCAEDMDLTDQQLKPCKCGYEICVWCWHQIMDMAEKENSEGRCPACRTSY
NKERIVGMTVNCERLMNGSNTEKKYKTQKTKLKMSADSRKNLSRVRVVQRNLVYIMGLPS
HLADENVLERKEYFGQYGKILKLSISRPATTAQQAPNNCFSVYITYAREEDAVRCIQSVH
NYTLESKSLRACFGTTKYCHSWLRNMTCSNPDCLYLHDIGCQDDSFTKDEIISAYSRSRV
PQVALNNLQRRAGKVLPPPADELGTNGTASSKTCLRMSSNNTTNHAKSANVSSGRGSRIS
TKCPPTMTSPCFQNPVKQKPEFCSSSSLYSSVSSIKCISGWDDHVSVLSNTPDIGAVDGG
SRVLEPLNHVSSILDHPVVSDDSSETSVFAESSLIISAWDDDATSKAPEKRNMMHMDSQS
SPQEPLKVNVAADEITSDLCGSPEIVFDETCNYAWDDEGDITSNQIKDLSFCHMDGKTTL
LEALRCSSDQDSQTSFSGDSTEGDTPCTPDISRSSSQLLDTLTGQKDGLTLREIVSLDSA
NDKNLECSDSLSKRVDCDDAISNSIAPKENTESVCLGISGINFDSRLVVDPQSKDKYQIV
SSNNRSNLSDGSLAIELCPNYSKKEVERPSSMPFSHAAVVIDSQFFPTDSPDWTSNQQSD
LSLAMVKGDNYILTNDDQREKVSNASIQTIISSCSLIPSKISCSPKSNSCKEDACDLQYP
IIANTSATDAVVDQGYAILRDQSGVLSVLSKQDQKDNYAIQRENFETPDMIRTDENKPNY
LVKSDDLITIKTENIDVGEGSIISNILSLDFDPWDGSLQSADNFAKLLNGMDKGSSSTLS
SSWKSQNHNQSRFSFARQENSTNVSATYSLATSHVEKSSSSNKESFIHNNILLNTVGGPG
VVLSNGSLFSSNNSVEQVLGPFVG
NT seq
2775 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacaatggagataaggcttgccctctttgtgctgaggatatggacctcactgac
cagcaattgaagccttgcaaatgtggttatgagatatgcgtttggtgctggcatcaaata
atggacatggctgagaaagaaaactcagaagggcgttgccctgcctgccgcacttcatat
aataaagagaggattgttggaatgacggtgaattgtgaaaggttgatgaatggaagtaac
acagaaaaaaaatacaagactcaaaagacgaagctgaagatgtcagcagattcacggaag
aatcttagtagggtgcgcgtggtacaacgaaaccttgtttacattatgggattaccttct
catttagctgatgagaatgtactggagcgtaaagaatattttggtcagtatggaaaaata
ttaaagctgtctatttctcgaccagcaacaacagctcagcaagctcccaataattgtttt
agtgtgtacattacatatgctagagaggaggatgctgttcgttgtattcagtctgttcac
aattatacattggaaagtaaatccttaagagcatgctttggtactacgaagtattgccac
tcttggttgagaaacatgacttgcagcaatccagattgtttatatttgcatgatataggt
tgccaagatgacagcttcactaaggatgagattatttcagcttattctaggagtagggtt
cctcaagttgctttgaacaatttgcaacggcgtgcaggaaaagttttacctccaccagca
gatgagttaggcactaacggaacagcttctagcaaaacttgtttgagaatgtcctcaaat
aatactactaaccatgccaaatccgctaatgtttcaagtggaaggggttcacgtatttca
actaaatgtccgccaacaatgacttcaccatgctttcaaaaccctgtcaagcagaagcca
gagttttgcagttcaagctcattgtattcatccgtatcaagcattaaatgcatttctgga
tgggatgatcatgtttctgtattatcaaacacacctgacatcggggcagtggatggtggg
tcaagagtcttagaacctttgaatcatgtttcttctatacttgaccatccagttgtatca
gatgactcatcagagactagtgtatttgcagaaagttctttaataatttctgcatgggat
gatgatgccacatcaaaggcacctgaaaaaagaaacatgatgcatatggattctcaatct
agtccccaggaacctctaaaggtaaatgtcgcagccgatgaaattacatctgatttgtgt
ggatcaccggagattgtttttgatgaaacatgtaactatgcatgggatgatgagggtgac
ataacatcaaaccaaatcaaagatctaagtttttgtcacatggatggcaaaactactttg
ttagaagcattgagatgttctagtgatcaggattcccaaacatctttttcaggggatagt
acggagggtgatactccttgtaccccggacatttcgcgtagttcttctcaacttttagac
acactaactgggcagaaagatgggttaaccttacgcgaaattgttagtttggattcagct
aatgacaaaaacctggaatgcagtgatagcctctccaaaagagttgattgtgatgatgct
atcagcaatagtattgcgcctaaggaaaatacagagagtgtatgtttggggatctctggt
ataaattttgacagtagacttgtggttgatccccagagcaaagataagtatcaaattgtg
tcatctaataatcgttctaatttaagtgatggaagtttagccattgaattatgtccaaat
tattcaaagaaggaggttgaacggccaagctcaatgcccttttctcatgcagctgttgtg
atagattcacaattcttcccgacagactcacctgattggacctccaaccaacagagtgat
ttgtcattggccatggtaaagggtgataattatattttaaccaatgatgatcaaagagaa
aaggtttcaaatgcttctattcaaacaataatttcttcctgcagtctaattccatctaaa
atttcatgctctccaaaaagtaattcgtgtaaagaagatgcttgtgatttgcaatatccc
attattgcaaatacttcagcaacggatgcggtggtggatcaaggatatgctatattaaga
gatcaaagtggagtcctttcagttttgtccaagcaggaccaaaaagataattatgccata
caaagggagaattttgaaacccctgacatgatacgaaccgacgaaaataaaccaaattat
ttggtaaagtctgatgatttaattacaataaagactgaaaacattgatgttggtgaggga
agcattatatccaatattttgtcactagatttcgatccttgggatggttccttacaatct
gctgacaattttgccaaattgcttaatggaatggataaaggcagctcttcgactttgtca
agttcatggaagtctcaaaaccataatcaatctagattttcatttgctcgtcaagaaaat
tcaacaaatgtttctgcaacttattctttggctactagtcatgtagagaaatcgagcagt
tcaaacaaagagtcatttattcacaacaatattttgcttaatacagttgggggtcccggt
gttgttttgagcaacggttctctcttttcatccaataactctgttgagcaagtcctggga
ccgttcgtgggttga
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