Dendrobium catenatum: 110108659
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Entry
110108659 CDS
T05027
Name
(RefSeq) probable NOT transcription complex subunit VIP2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
dct
Dendrobium catenatum
Pathway
dct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110108659
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dct03019
]
110108659
Messenger RNA biogenesis [BR:
dct03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110108659
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110108659
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
110108659
NCBI-ProteinID:
XP_028550590
LinkDB
All DBs
Position
Unknown
AA seq
661 aa
AA seq
DB search
MKKMSGLLNSQLNGSASNFPESTGRPFTNSFSAQSATAQGFHPSGLHNVSGSFNIPNMSA
SLASRNVALSGVPSSGVQQPGGSISSGRFASNNLPVGLSQISHGSSHGHSGVTSRGGISI
VGSPGFSSSLNGVGGSLPGISSNSVISSNRNSVPGMGTSPILGNISSRAANSLGNIVNGG
NMGRSISTSGALPALASRGSFGGNIGSGSLNLQGTNRLMGSMLQQAPQMLGMLGNSYPSS
GGLLSQNHLQAGNSALTSMGILNDINSNDSSPFDMNDFPQLTGRPSSSGGPQGQLGSLRK
QGISSIVQQNQEFSIQNEDFPALPGFKGGSSDFSMDLHQKEQLHENVSMLQSQHFPMARS
VGFNLGGAYPSARQQQQQLATAASTAGVTFKPGNNQELLHLHGSDLFSSSNGSYQSQVQP
NGLPSIGFRPSSSPSPASSIGSYDQNFQQYQHAQNQSQQQLQQVSSVAHSYRDQSLKSLQ
VSQTPTDRFGLLGLLSVIRKNNPDLTSLALGIDLTTLGLNLNSNDNLHKKFSSPWSDEPL
KGEPECSVPSCYYAKQPPPLQQRHFSKFQLGTLFYIFYSMPKDEAQIYAAYELYLRGWFY
HKEAQLWFTGIPNMEPLVKTHTYERGAYFCFDPSTWETIRKENFVVHYESVERNPTLPTQ
H
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaatgtctgggttgctcaattcgcaacttaacggttcagcatcaaacttccct
gaatccacaggcaggccattcacaaattcattttctgcccaatctgcaactgcccaagga
tttcatccctcagggttgcacaatgtaagtggaagcttcaacatacccaatatgtcggca
tcacttgcatcacgcaatgtagcattgagtggtgttccatcgagtggtgttcagcaacct
gggggaagcatctctagtggacgttttgcgtccaacaatcttccagttggtttatctcag
atttcacacggaagctcacatggacattcaggagttactagtcgtgggggtataagtatt
gtaggaagccctggttttagtagcagtttgaatggagttggtggttcactccctggaatt
tcgtcaaactctgtcatttctagtaaccgtaactctgtccctgggatgggcacgtcgcca
attttgggcaatataagttcaagagctgctaactcactgggtaacatagtcaatggtggc
aacatggggagaagcataagcactagtggagctcttcctgctctagcatcacgtgggagt
tttggaggaaatattggttcaggtagtcttaatttacaagggaccaatcggttgatgggg
agcatgcttcaacaagcgcctcaaatgcttggcatgcttgggaattcttatccttcctct
ggaggactgttatctcagaatcatttacaagcaggaaacagcgcattaacctccatgggt
atactcaatgatatcaattcgaatgatagttctccatttgacatgaatgactttcctcag
ttaacagggcgaccaagttcttctggagggccacaagggcaattgggttcattaaggaag
caaggaatcagctctattgtccaacagaaccaggaatttagcattcaaaatgaagatttt
ccagcattacctggatttaaaggtggtagctcagatttttccatggatttgcatcagaag
gaacaacttcatgaaaatgtctcaatgcttcaatcgcaacatttccctatggcaaggtca
gtcggtttcaacttgggaggtgcttacccatctgctcgtcaacaacaacagcagcttgct
actgctgctagtactgctggtgttacttttaaacccggaaacaatcaagagcttctccat
ttgcatggttctgacttgttttcttcctcaaatgggagctatcagtctcaagttcaaccc
aatggtctccctagcattggatttagaccatcgagctctccaagtccagcttccagtatt
ggatcatatgaccagaattttcagcaataccaacacgcccagaatcaatctcagcaacaa
ttgcaacaggtgtcttctgttgctcactcatatagagatcagagtctgaaatctttgcaa
gtatcacaaactccaacagatcgatttggtttgcttggtttgctaagtgtcataaggaag
aataatccagatctaacttcccttgccttggggatagatttaaccaccctaggattaaat
ttaaactcaaatgataatcttcacaagaaatttagttccccatggtctgatgagcccttg
aaaggggagcctgaatgtagtgtcccttcatgctactatgccaaacagcctcccccactt
cagcaaagacatttttcaaagtttcagttgggaacgctgttttatatcttttacagcatg
ccaaaggatgaggctcaaatatatgctgcttatgaactatatttgcggggttggttttac
cacaaagaagctcaattgtggttcactgggattcctaacatggagcctcttgtcaagacc
catacctatgagcgaggggcatatttttgctttgatccgagcacatgggaaactattcgg
aaggaaaattttgttgttcattatgaatcagtggagaggaatcctactcttccaacacag
cattaa
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