Dendrobium catenatum: 110108989
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Entry
110108989 CDS
T05027
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
dct
Dendrobium catenatum
Pathway
dct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110108989
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dct03019
]
110108989
Messenger RNA biogenesis [BR:
dct03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110108989
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110108989
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
110108989
NCBI-ProteinID:
XP_020695525
LinkDB
All DBs
Position
Unknown
AA seq
655 aa
AA seq
DB search
MSGIFNSNLGGSNSSLSDATGRAFASSFSAQSANAPSFHHSGGMQGLHHNMQGNFVPNIP
GSVASRNSTMTAVPSSGLQQPGSSISSGRFSSNNLPIAMSQISHGLSGITERGGISVAGN
PGFSSNINGVGGSIPGFSSGAPAGNHNAIPGMGVNPILGNLGSRMSSSAGNISAGVNIGR
SINSGGPAISSLASRASLAANSGSGTLNLQGANRLMGGMLQQAPQMMGMLRNSYNMSGGP
ISRQLQGGNSLLSSMGMLNDANSNEGSPFDINDFPQLTGRPSSAGGPQGQLGSLRKQGIG
VSSIVQQNQEFSIQNEDFPALPGYKGGNSEFAMDLHQKEQPHENVSVMQSQNFAIGGSTG
FSHGVAYPSNRQQHQQHSTPVSTSGGVSLAAGSNQDLLHLYGSDLFPSSHGAYQSQVQNT
PSLGLRALSSQNPASGGGPYDQLIQQYQHSHNQSQLRLQQMSAINQSYKDHSLKSMQGTQ
MSERFGLLGLLSVIRVNDPNLTSLAMGMDLTTLGLNLLSPPGDLHKKFNSPWSDEPAKGE
SEYCIPTCYNSKPHPTLKQGHFEKFNDGTLFYIFYSMPKDEAQLFAAYELYSRRWVYHRE
LQLWLRRIGEPLVKTQTYERGSYHYFDPSTWQTIRKDNFVLTYEALEKKPILPQH
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgtctgggatatttaattcaaatcttggtggttcaaattcaagtcttagtgatgcgaca
ggaagggcttttgcatcatctttttccgctcaatcggcaaatgctcctagttttcatcac
tctggaggcatgcaagggttacatcataacatgcaagggaactttgttccaaacattcca
gggtcagtggcatcaaggaattccactatgactgctgttccttcaagtggtcttcaacaa
cctgggagtagcatctcttctggaagattctcatcaaacaatcttccaatcgctatgtct
cagatctcacatggactctcagggattactgagagaggtggcatcagtgttgcaggaaac
cctggctttagtagcaatataaatggagttggtggttccatacctggattttcctctggt
gcgcctgctggcaaccacaatgctattcctgggatgggagtcaatccaattttgggaaac
ctaggctctcgaatgtcaagttcggcagggaatatttctgctggagttaacattggaagg
agcataaactctggtgggccagccatttccagccttgcatcaagagcaagtttagctgct
aacagcgggtctgggactctcaatttacaaggagcgaatagactgatgggtggtatgctt
cagcaagctcctcaaatgatgggaatgcttaggaactcttataacatgtccggtggaccc
atatcacggcaattgcaaggagggaatagcttgctaagctctatgggaatgttaaatgat
gccaattcaaatgagggctctcctttcgacataaatgatttccctcagttaactgggcgc
cctagttcagctggagggcctcagggtcagttgggttccttgcggaaacaaggtattggt
gttagttcgatagtgcaacaaaatcaggaatttagtatccagaatgaagattttcctgct
ttgcctggttataaaggtggaaactcagaatttgcaatggatttgcatcagaaggagcaa
cctcatgaaaatgtttctgtaatgcagtcacaaaactttgccattggggggtctactgga
tttagccatggagtggcctatccatcaaatcgtcagcaacaccagcagcattcaacccct
gttagtacttctggtggagtctctttagcagctggaagcaatcaagaccttctccatcta
tatggctctgatttgtttccatcttcacatggagcctatcagtctcaggttcagaatact
cctagccttggattaagagcattaagttctcaaaacccagcttcaggcggtggaccttat
gatcaacttattcagcaatatcaacactcgcataaccaatctcaacttcgcctgcaacag
atgtctgctattaatcaatcatataaagatcatagtctgaagtccatgcaagggacgcag
atgtctgagaggtttggtttgttgggtttgttgagcgtaatcagagtaaacgacccaaat
ctcacatcccttgctatggggatggatctcacaactctgggattgaatttgttaagccca
ccaggtgatttgcacaagaaatttaattccccatggtctgatgagccagccaaaggagag
tccgagtattgcattccaacttgttataactctaaaccacatccaacattaaagcaagga
cattttgagaagttcaatgatgggacactattttacatcttttacagcatgccaaaggat
gaagctcagttgtttgctgcttatgaactatattcacggagatgggtctaccacagagag
cttcagttatggttaaggagaatcggagagccgcttgttaagactcaaacatatgaaagg
ggatcgtatcattacttcgatccaagtacatggcaaactattcgcaaggacaattttgtc
cttacatatgaggcattggaaaagaaaccaatccttcctcaacattag
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