Dendrobium catenatum: 110111294
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Entry
110111294 CDS
T05027
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
dct
Dendrobium catenatum
Pathway
dct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110111294
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dct03019
]
110111294
Messenger RNA biogenesis [BR:
dct03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
110111294
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_11
TPR_2
TPR_8
TPR_16
TPR_14
TPR_CcmH_CycH
TPR_12
TPR_17
TPR_19
TPR_9
TPR_7
TPR_MalT
BTAD
TPR_NPHP3
Motif
Other DBs
NCBI-GeneID:
110111294
NCBI-ProteinID:
XP_020698750
LinkDB
All DBs
Position
Unknown
AA seq
1178 aa
AA seq
DB search
MEGEEDFLSHLQQRLSSDPEYPSNHFNLGIFLWKKGDIVGGDESKDFKSRAAEHFLASAR
LNPGDSASFRILGHYYSAVVVDTQRAFKCYQRALSLSPDDFEAGDALCDLLDVNGKESLE
IAVCKEASEKSPRAFWAFRRLGYLQIYHKKWEEAVQSLQHAIRGYPACADLWEALGLAYH
RLGRLTAAIKSYGRAIELEDSKIFSLIESGNILLMLGSFRKGIELFRHALEVSPQNVSAH
FGLASGLLGLSKECASIGAYEWGASLLKDASEITSACSHLSSNFSSVWKLHGDIQIAYAK
CLPWENKITSTHIDEGAFKASIIDWKNSCLSAAKNARLLYQRALHLTPWQSNIYADIAIT
IDLIYSLLEREKTDHDTRQLSERMSLGSLMFEGVNCDFWVILACVTNDYALKQHALIRGL
QLDNSLAVSWAYLGKLYMKLGENHLATQSFDRARSLDPSLALPWAGMSVASHDRNYSLSE
AYESCLRAVQIMPLAEFQIGLGMLAAVSGHLLSPQVFSAIRHSIQRSPYYPESHNVHGLI
CEARSDYQSAISAYRLARSALRIASLSKDSAKHCLTDVSVNLARALCQAGHMLDAEQECE
ALNKDGMLNCKGLQIYAVALWKLGKNDQSLHVARNLAKNVSTMEESSCTAAIGLICQLIY
RISGLESAISTILKLPREYLNGAKMSLILSTINALDPNNRLQLLLPTSLSSFGAYDLIVE
MHTITATNKMIQNGSEQSLDIHSGIKYLKKVLRLYPDSKLLRNHLGSLILYSGDWLASHI
APRCTVLPTGYPVRTGLKSPFEIHGGAGVSCYASCVTRPKFSFPACRCQPMHGSTVTDHL
QKWLHQEPWNHEARYLLILNLLQRAREEKFPPHLCIGLKRLISIALSMINETKYQRFLLL
LSASEISLQCQDYSDCTNYAATALELLPSNDNSFFAHLQLCRAYAAHEDLENLRNEYMNC
LKFNTVNQIGWLSLKYLESRYKLQNGCNTVDMNYKICFTSKLSSSNMWVAVFGLVSALCF
IWDNDFISAEQALAHACSISKEESCLFFAHGAVCMELARQQMGLQFLSRALQHLVKAQVT
SPFPLPILSALLAQVEGSLGSKAKWERNLRLEWFSWPAEMRPAELYFQMHILARQSTAAC
DPQTNIESYQSPLRWVLRAVHLNPSCLRYWKVLQKLAD
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atggagggagaggaagattttctttctcatctgcaacaaagactaagttccgatccagag
tacccttcaaaccacttcaaccttggcatcttcttatggaagaagggagatatcgtcggc
ggtgacgagtccaaggacttcaaatctagggccgcggagcatttcctggcctctgcgagg
ctgaatcccggcgacagtgcctctttccggattctaggacattactacagcgcagtcgtg
gtggatactcagagggccttcaagtgttaccaaagggcactttctctcagtcccgatgac
ttcgaggctggtgatgcactctgtgatttattggatgtgaatgggaaggaaagcctcgag
attgccgtgtgcaaggaggcttcagagaagtctccaagagcgttttgggcttttaggagg
ctgggatacttgcagatctaccataagaaatgggaggaggcagtgcagagcctgcagcat
gcaatccgaggatatccagcatgcgctgatctgtgggaagctctaggtcttgcatatcat
aggctgggcaggctcacagcagcaattaagtcatatgggcgtgcaattgaactggaggat
tccaaaatattttcactaattgagagtggcaacattcttcttatgcttggttcttttcgg
aagggaattgagctatttcggcatgctttagaagtttcacctcagaatgtgtcagcacat
tttgggcttgcttctggtctccttgggctatcaaaggaatgtgctagtattggagcatat
gaatggggcgcttctcttttgaaggatgcatcggaaattactagtgcttgttctcatctt
tcaagcaatttttcttcagtctggaagctgcatggggacattcagattgcatatgcaaaa
tgcttaccatgggagaacaagattactagtacccacattgatgagggagctttcaaagca
tccatcattgattggaaaaatagttgcctttcagcagctaaaaatgcaaggctattgtat
caacgagctttacacctgaccccatggcagtccaatatctatgctgatattgcaatcaca
attgatctcatttattctctgctagagagagaaaaaacagatcatgatactcggcaacta
tcagagaggatgtctttggggagcttaatgtttgagggagttaattgtgatttttgggtt
atactggcctgtgtaaccaatgattatgcattgaagcagcatgctcttatcaggggactt
cagctggataattctttggctgtatcatgggcataccttgggaagctttacatgaaacta
ggtgaaaatcatttggctactcaatcatttgatcgtgctagaagtttagatccctcttta
gcattaccatgggctggcatgtcagtagcttctcatgaccggaactactccctgagtgaa
gcctatgaaagttgcctaagagctgtgcagataatgcctcttgcagagtttcagattggt
cttggtatgctagcggcagtttcgggtcatttattgtctccacaggtattttctgcaata
cgtcattctattcaacgttcaccttattatccagaatcacataatgtacatgggctaatc
tgcgaagcaaggtcagattatcaatctgcaatatctgcttatcggttggcaaggtctgct
ctgaggattgcgtcactctcaaaagactctgctaaacattgtttaactgatgtatctgtt
aatcttgccagagcactttgtcaggcaggacatatgcttgatgcagaacaggagtgtgaa
gccttgaataaagatggaatgcttaattgcaagggcttgcaaatatatgctgttgcattg
tggaaacttgggaagaatgatcaatctctccatgtggcaagaaatttggccaagaatgta
tcgaccatggaggagtcttcttgtactgctgctattggtttgatatgccagttgatatat
cgtatttcaggcctggaatctgcaatttcaaccattttgaaattgccaagggaatacttg
aatggagcaaaaatgagtttgattctatctacaattaatgctttagatccaaataatcgg
ttacagttgcttcttccaactagtctgagttcttttggtgcttatgatttgattgttgaa
atgcataccataacagctacgaataaaatgatccagaatggctcagagcagtctcttgac
attcacagtggcattaagtacctgaaaaaagttctacgtctgtatcctgacagcaaatta
ctaagaaaccatcttggatcacttatattgtattcaggagactggttggcttcacatata
gcaccgagatgcacggttttaccgacagggtaccctgtaaggaccggcttaaaatcacca
tttgaaatccatggaggggctggagtttcttgttacgctagctgtgtaacaaggccgaag
ttttctttccctgcctgccgatgccagcctatgcatgggtcaactgtgactgaccatctg
caaaaatggttgcatcaagaaccatggaaccatgaggcacgttatcttcttatacttaat
cttctgcagagagcacgtgaagaaaagttccccccacatctttgtattggtttgaaacgc
ttgatttccattgctctctctatgataaatgaaactaagtatcagaggtttctacttcta
ctatctgcatcagagatcagtttgcaatgtcaggattattctgactgcactaactatgcg
gccactgcattagaacttcttccatccaatgacaattccttctttgcgcacttgcaatta
tgtcgtgcctatgcagcacatgaagatttggaaaacctccgtaatgagtacatgaattgt
ttaaagtttaatacagtcaatcaaattggttggctttccctgaaataccttgaatctagg
tataaattgcagaatggctgtaacacagttgatatgaattataagatatgcttcacatca
aaacttagttcctctaacatgtgggtggctgtatttggattagtatcggccctatgcttc
atatgggataatgattttatcagtgcagaacaagctttagcacatgcatgttccatttcc
aaagaagaaagctgccttttttttgctcatggtgccgtgtgcatggagcttgctaggcaa
caaatgggtttgcagtttttatcacgtgctttacagcatctggtcaaggcccaggtgact
tcaccatttcctttacctattctttcagcattattggctcaagtagagggaagccttgga
tcaaaagcgaagtgggaaagaaatcttcgtcttgaatggttttcttggccagcagaaatg
aggcctgctgaattgtactttcagatgcacatccttgcaagacagtctactgcagcttgt
gacccgcaaacaaacatagaatcataccagagccctttgagatgggttcttcgagcagta
catttgaatccttcttgtttgaggtattggaaagttttgcagaagctcgctgattga
DBGET
integrated database retrieval system
