Dendrobium catenatum: 110111302
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Entry
110111302 CDS
T05027
Name
(RefSeq) zinc finger CCCH domain-containing protein 40
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
dct
Dendrobium catenatum
Pathway
dct03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110111302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dct03041
]
110111302
Spliceosome [BR:
dct03041
]
Complex B
Other components
Prp19-related factors
110111302
Complex C
110111302
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
RRM_YTH1
zf-CCCH_2
RRM_occluded
zf-CCCH_12
zf-CCCH
zf-CCCH_3
RRM_3
zf-CCCH_4
zf-CCCH_PARP12
Nup35_RRM_2
DUF7929
Motif
Other DBs
NCBI-GeneID:
110111302
NCBI-ProteinID:
XP_020698760
LinkDB
All DBs
Position
Unknown
AA seq
486 aa
AA seq
DB search
MAHRLLRDAQADGWERSDFPIICESCLGDNPYVRMTIAHYDKECKICTRPFTVFRWRPGR
DARFKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALAINSNDAIPKSDVNREYFAE
EHDRRARAGIDYESSYGKMHPNDTILKLQRTTPYYKRNRAHVCSFYVRGECTRGAECPYR
HEMPMTGELSQQNIKDRYYGVNDPVALKLLGKAGEMPSLSPPDDESIKTLYVGGLDARIT
EQDLRDHFYAHGEIESIRMVSQRACAFVSYTNREGAEKAAEELSNKLVIKGLRLKLMWGK
PQVQKTELENADDEAAHQSLVAHGGLLPRAVISQQQSSLQPHPPGTHEHNNQQMPMHYFN
IPPPLPSERTFYPSMDPQRMGAAVPVPSSQEPSDGKAGLDRQTRGAEGSSQIYPGPPPQM
QGQYPPYYPPYAYMAPPPPHYQHQQYHPYQQMMLPPRTPQPVPQQPQPSASLLHQNAGAA
ASSSQN
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atggcacatcgacttctacgcgacgcccaggccgacgggtgggagcgctccgactttccg
atcatctgcgagtcctgtctcggtgataacccttacgttcgaatgaccatagcacactat
gacaaggagtgcaagatttgcaccaggcctttcacggtcttcaggtggaggccaggccga
gatgcgcgctttaagaagactgagatttgccagacatgtagtaagctgaaaaatgtatgt
caggtttgcctcttggatctggaatatggtttgcccgtacaggttcgcgatactgcactt
gctatcaattccaatgatgccattccgaagagtgatgttaacagggagtactttgctgaa
gagcatgaccgaagggcaagagctggaatagattatgagtcctcttatgggaagatgcat
ccaaatgataccattctaaagcttcaaaggacaacaccatattacaagagaaaccgtgca
catgtttgcagtttttatgtgcgtggagagtgtactcgaggtgctgagtgcccttatcgg
catgaaatgcctatgactggggagttgtcacagcaaaacataaaagatcgatattatggt
gtgaatgatcctgttgcccttaaacttctgggaaaggctggcgagatgccctctctatct
cctcctgatgatgaaagcataaaaacactttatgttggcggtcttgatgcccgaatcact
gagcaggatcttagggatcacttctatgcccatggagagattgagtccattaggatggtt
tcccagcgtgcatgtgcctttgtgtcctacaccaaccgagaaggagctgagaaggccgct
gaggaactctctaacaagcttgtaataaagggccttcgcctaaaactaatgtgggggaaa
ccccaagtacaaaaaacagagttggagaatgcagatgatgaagcagctcaccaaagtctt
gtggcacatggtggcttactcccaagggcagttatatcacagcagcagagcagtctgcag
cctcaccctccaggaacccatgagcataataaccagcaaatgcccatgcattacttcaac
atcccccctccattgccatcagagaggaccttctacccatccatggatccacagaggatg
ggagcggctgtgcccgtgccctcttctcaggaaccgagcgatggcaaggctggattagat
aggcagaccagaggcgcagaaggttcttcccagatatatccagggcctcccccacagatg
caaggccagtacccaccttattatccaccctatgcttatatggcacctcccccgcctcat
taccagcatcaacaataccatccatatcagcagatgatgttgcctccacggacgccacag
ccagtgccacaacagccacaaccttctgccagtcttctgcaccagaatgctggtgctgct
gcatcttcatcccagaattga
DBGET
integrated database retrieval system
