Dendrobium catenatum: 110111678
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Entry
110111678 CDS
T05027
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1 isoform X1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
dct
Dendrobium catenatum
Pathway
dct04120
Ubiquitin mediated proteolysis
dct04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
110111678
04120 Ubiquitin mediated proteolysis
110111678
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dct04121
]
110111678
Enzymes [BR:
dct01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
110111678
Ubiquitin system [BR:
dct04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
110111678
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-rbx1
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-ANAPC11
FlxA
zf-RING_Vps41
zf-HC5HC2H
zf-RING_11
zf-RING_5
MIX23
FAR1_N
zf_RING_Vps8
Motif
Other DBs
NCBI-GeneID:
110111678
NCBI-ProteinID:
XP_020699316
LinkDB
All DBs
Position
Unknown
AA seq
519 aa
AA seq
DB search
MKLQTYAAFSFLATTAAVYHAFSSRGQFYPAMVYLSTSKICFVLLLNMGLVMMCITWQLV
KRFFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVMFLAMVTALLLIKALHWLAQ
KRVEYIETTPAVPKLSHIRIVSFMGFLLLVDCLFLFISLKSLIQTWEASVFLFFAFEYTI
LATTTISTFVKYVFYVSDMLMEGQWENKAVYTFYLELVRDLLHLSIYIVFFLVIFASYGV
PLHLIRELYETFRSFRMRVADYIRYRKITSNMNERFPDATAEELNASDATCIICREEMVT
AKKLRCGHLFHVHCLRSWLERQHTCPTCRALVAPPENGSAAVVNQQAVPSDLQPGPAVAG
TTQASEAGAANQNQSLLQAAAMAAKVYEKSFVHLPTNQYICPPGYTVLPQIPKAEASNGQ
LLKNQPISNQHNAALFQVPGSSIGFRETTLGNSNLQGSPLKIEKLIQSQIELLQAQLQAL
EQLMAEQSKAKSAAASSSSSVPASSDCGCHGEAEDADTD
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgaagctccaaacttatgctgcatttagcttcttggcaacaacagctgcagtttaccat
gcattcagcagtagagggcagttttatcctgcgatggtttacttatctacatccaagata
tgttttgtacttcttttgaacatgggtttagtcatgatgtgcattacatggcagttagtc
aagcgcttttttcttggttctcttagagaggcagaagttgaaagattgaatgagcaatct
tggagggaggtcatggaaattctttttgctatcacgatattcagacaagatttttcagtc
atgtttcttgctatggttaccgctcttctgttgatcaaagcattgcattggttggctcaa
aagagggttgagtacattgagacaactccagccgtacctaaattatctcacattcggatt
gtttctttcatgggatttcttcttcttgttgattgtctcttcttgtttatttctttaaag
tcattgatacagacctgggaagcatcagttttcctcttctttgcttttgaatacactata
ctggctacaacaacaatttcgacttttgtaaagtatgttttctatgttagcgacatgctt
atggaagggcagtgggaaaataaggcagtctatacattttacttggagcttgttcgtgat
cttcttcacttgtcgatctatatagtattctttcttgtgatctttgcgagctatggtgtg
cctctgcacttgatccgtgagctttacgaaacattccgcagctttagaatgcgtgttgcg
gattatattcgttatcgcaaaatcacttcgaatatgaatgaaaggtttcctgatgcaaca
gctgaggaacttaatgcaagtgatgcaacatgtatcatatgccgcgaagagatggttaca
gcaaagaagttgcgctgtggtcatctttttcacgtgcattgtcttagatcatggttggaa
agacagcatacttgccccacctgtagagccttagttgctcctcctgaaaatggttcagca
gctgttgtgaatcaacaagcagttccttctgatcttcagcctggaccagcagtggctggg
actacacaggcttccgaagctggtgcagcaaaccaaaatcagtctctacttcaagctgca
gccatggctgctaaagtgtatgaaaaatcttttgtccatcttccaacaaaccagtacatt
tgcccgccaggttataccgtacttccccagattcccaaagcagaggcttcaaatgggcaa
ttgctgaagaatcaacctatttccaatcaacacaatgctgcgctttttcaagttccagga
tccagcattggcttcagggagacaacccttggcaattcaaatctacagggttctcctcta
aaaattgagaaactgattcagagtcaaattgagcttcttcaagcccagctacaagctctt
gaacaactgatggccgagcagtcaaaagcgaagagcgctgctgcatcaagcagtagtagt
gtgcctgcatcatctgactgtggttgtcatggggaggctgaagatgctgacacagattaa
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