Dendrobium catenatum: 110112141
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Entry
110112141 CDS
T05027
Name
(RefSeq) small subunit processome component 20 homolog isoform X1
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
dct
Dendrobium catenatum
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dct03009
]
110112141
Ribosome biogenesis [BR:
dct03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
110112141
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
RYDR_ITPR
Chordopox_A30L
XMAP215_CLASP_TOG
Motif
Other DBs
NCBI-GeneID:
110112141
NCBI-ProteinID:
XP_020699901
LinkDB
All DBs
Position
Unknown
AA seq
2715 aa
AA seq
DB search
MATSQSQAVKCLNTSTNGRRFVFKTFSQRVEEIDIDVFRSLEHVGSEPKDGSSFFREALL
YWRELNTAEDFISFYDEMMPLVQTLPQIILQKELIFSELVGRLQMGAKLSLEPILMLIVA
FSRDVLEEFLPFLERFASSLTNLLSSGGDRDPEVLEQVFTAWSYIVMYLQKNLVKDVVNF
LKITAQLRYYPKDYVQEFMAEVVSFLLRNAPLNQLKNGIRKIIMDVVKGSSAAKKLGAAA
LLWHVLSRTSSRLHSKARQVLLLLMEESVLSARDIPQGSEAVLDVVNSILHRFFEEIDHT
EQKVVFECLFESIYCSIKKGCLAHLVQLLTLLTTAVRLSKGGKCFDGDKMIELIRLLMHS
CIVSAEIINSRDCSSEAAVPVVSNKILQLVLCLLDMPQKSSYIYITMEIVPAFKLEHSSL
LMFVKGLVHKDPEVVLACRTYIVSTIDEMIETSPDEVLVLILEFFERQSSNILDGIPRRT
CKFFIETLNYWANLLSDISTINSVSDLSSKLAVLWGVIRCYPSFECTGGSPLLIRNLIGI
LDQLLEVNADSIAGVPMSVWQDLLGATLNSYHKLLLHESSGPSEAYIFLHMAKKHKSSPR
ILSAVAEYLETFLWSKDDAGVSQRMFAEVDVEDAQDSIRIFADNLSLPNKEIRISTLRIV
SHYNFPVEPPTSEDRPLKKVKYEESDSAKVFECINVVDLLLSIEATPISVLTSRKVAVLI
SRLQMVVASGKLHDDYVPLIFNGVIGILHNRFSLLWDPALECLTTLIRRYSRIVWNQFVQ
HLEYYQLKSLSGNNAATKLNSETPQPKSIPSCYALTLVQCFNMYLEYEFDSTPCITVMAL
LLKTLQKISAIAESHSGQLIPLFLKFLGYTDVDKFSVESFSEYKCKRKEWRSVLKEWLSL
LKLMHNSRSLYKSQLLKDVLMSRLLDEVDPDIQLNVIDCLLNWKDDYLIPYDQHLKNLII
SRNIREELTTWAVSKESEYIQEEHRAQLIPVVVRLLAPKVRKIKTLALHKHAGMNIRRAI
LCFLAQLEVDDLHLFFSLLLKPLLWNHHGVNVLDGYSDGICSRFSGQWQSLIPLNCSITE
AIANISLKRKYGFLYVLEDVLKTFDEIHIRPFLRPLMTFVVLILENCMSNIKNEVGRKIC
ASEKCVAGDLEVDVAENSAHNFLVMSASGKQLKDLRSLCLKILSSALSKHDSHDFGCEFW
DIFFNSVKPLIDNFKNEGSSSEKPSSLFSCFLVMSRSPVLVSFLNREANLVPAIFSILTV
RTASDAIISSVLGFIENLLNLETDSDLENDSIKAVFYPHLEVLVKNFHELILSNEDSHRK
SAIWPGKRELRIFKLIAKYVKSQSIALPFLDILLPFFKRKALDFDDCLEALHVMKGILQY
LPVNVEKTSGKILKSIFPILAVAGVDVQLCVCDIIDSLALIDPSLAYLARLLRDLTAVSS
MDIGEFDYDTRISAYEKINPELFSFLGVNHALLILSHCIYYMSSDELILRQCASKSLQAF
VQFASSYLKTDAKNSYTHDAVCNQSSGPAVETSIETNWTKACILWIISDVLLKNMKEALT
KEISIQKEWMTLLRDMIYNLHEVPALSTFRPLCSEDPEVDFFNNILHLQIHRRRRALMRF
INVINAGNFTENIAVSIFVPLFLSMMFEVKDGKGEHIREACLDSLASISNKMQWESYRSF
LMKCFREITVRPDKQKLLVRLICAILDKFHFFASKSCERDEVGSCDALCSGNPQGNAIVT
LQDSTSVKAIPEIQSYLQKTVLPQIQKILTMDSEKVNVNISLAALKLLKLLPLDTMDSQL
SSIVHHVCTFLKNRLESVRDEARSALAACAKELGLEYLHFIIKVMQSILKRGYEMHVLGY
SLNFILSKILIGKSTGSLDYCLEELVSIAENDIFGDVAEEKEVEKIASKMKETRKSKSFE
TLKLISQSITFRTHAMKLLSPIHNHIEKHLTPKIKRKLEIILSHIASGIESNPSAQTAEL
FIFVYGLIEDNIAAELSYRKERSETAENETSSFDVIVKEKPLRKSACFLKNSYLITGFAL
EMLHNRLKNIKLDKNDQQLLSMLDPFVKQLGYCLNSKFESVLAATFRCLAPLFKLPLPSM
DKESDKIKSLLLSIAQRSGDGSSSLALSCIKLLTMLLRNPRISISHGELHMIIRFPMFID
IQTNPSTLALSLLKTIFARKLVVHEIYDIILRVAELMVTSQSEPIRRKCSEILLQFLLEY
QLSDKRLQQHMDFLLSNLSYEHPSGRESVLDMLHAILIKFPRSVIDSHVQTFFLHLVVSL
ANEQDQRVRSMVLTVLKELISRTSQQMLQPILEYTLSWYFGKKQYLWSPSAEVIGLLIEV
WRGGLKRHIIGIMQTARNILKVSVDAVDIAELGVSKEPVVPCWKEAYYSLVMIEKMFLQF
SELYFQSDFEEIWGLICKFLLHPHLGLRNISSRLVALYFTAVSEACKGDSEKMIQKNLFL
INPSRLFAVAVSFLKQLEGQVIDDASGNMITQNLAFSICSLHSFAKHKSLTPLHKLWSML
AACEQSSYLDAFDLLGSRKAKRIFLLSTSVTAQSSTASENEDLQSLLVKPLLKRLGKIAM
EKENFQMKIVFNCIRTISSQIGVEGSREYAIYIILPLYKACEGFAGKVVEDEIKQLAEEV
RDGVRDILGVENFIQVYNRIRKNLKGKRDHRRTQQKLIAVMNPMLHAKRKLRVAAKHRAY
KRRKFDAMKMRWKRT
NT seq
8148 nt
NT seq
+upstream
nt +downstream
nt
atggcgacctcgcagtcccaggcggtgaaatgcctcaatacctcgacaaacggtcggcgt
tttgtgttcaagactttttctcagcgagtggaggaaattgatatcgatgtattccgtagc
ctggaacacgttgggtccgaacccaaggatggctcttccttcttccgggaggctttatta
tactggagagagcttaacacagcagaggactttatatcattttatgacgagatgatgcca
ttagtccaaactttgcctcagataatactgcagaaagagttaatattctcggaacttgtt
gggagattgcaaatgggagcaaagctgtctctcgaaccaatcctaatgttgattgttgct
ttttcaagggatgtccttgaagaatttttgccttttttggaaaggtttgctagctcttta
accaatcttctttctagcggaggagatcgtgatcctgaagtccttgagcaggtcttcacg
gcttggtcgtatatcgttatgtatttgcaaaagaatcttgtaaaggatgttgtcaacttc
ctgaaaattacagcccaactaaggtactatccaaaggattatgtccaagaatttatggct
gaggttgtttcatttttgttacggaatgctcctttaaatcaacttaaaaatgggatcaga
aaaataataatggacgtggtgaaaggttcatccgctgcaaagaaacttggggctgcggct
ttattatggcatgttttgagcagaacctcctcacgacttcattcaaaagcgaggcaagtt
ttgctattgttaatggaagaatctgttctaagcgcgagagatattcctcaaggttcagaa
gctgtacttgatgttgtaaatagtattttgcatagattctttgaagagatagatcacaca
gagcagaaggttgtatttgaatgcttatttgagagtatatattgtagcataaagaagggt
tgcttggctcacttagttcagttactgaccctcctaacgactgctgttcgtcttagcaag
ggtggcaaatgctttgatggagacaaaatgatagagcttattagattgctcatgcattcc
tgcattgtttctgcggaaatcattaactcaagagactgttcttctgaggctgcagtgcct
gtcgtttctaataagattttgcagttagtgctttgtctgctggacatgcctcaaaaaagt
tcttatatatacataacaatggaaatagtcccagcatttaagttggaacattcaagtttg
cttatgtttgttaaaggactcgttcataaggatcctgaagttgtacttgcctgcagaact
tatatagtcagtaccattgatgaaatgattgagacctcaccagatgaagtccttgtattg
atactggaattttttgagagacaatccagtaatattcttgatggaattccacggaggaca
tgcaaattctttattgagacattaaattattgggctaacctattaagtgacatttcaact
atcaacagtgtctcagatctttcgtccaagttagctgttttatggggagttataagatgc
tacccatcttttgaatgtacagggggaagtccattgctaatcaggaatttgattggaatt
cttgatcaactcttggaagtcaatgctgatagcattgcaggtgttccaatgtccgtttgg
caagatctacttggtgctactttgaattcttatcataagctgttattgcatgagagtagc
gggccttcagaagcatacatttttctgcatatggctaaaaaacacaaatcatctcccaga
attttgtctgctgtagctgaatatttggaaactttcttatggtcaaaagatgatgctggt
gtctcccagcgtatgttcgctgaagttgacgttgaagatgctcaggattcaatcaggatt
tttgcagataacttaagcctacctaataaggaaattcgaatatcaaccctaagaattgtt
tctcattataattttccggttgagcctcctacaagtgaagatcggcctctcaagaaagtt
aaatacgaggaatctgactcagctaaagtttttgaatgcataaatgtcgttgatcttcta
ctttcaatcgaagcaactccaatttctgtgttgacaagtcgaaaggttgccgtcttaatc
tccagattacagatggtcgttgcatctggaaagctacatgatgattatgttcctctaata
tttaatggggttattggcatcttacataatagattttctcttctctgggatcctgctttg
gaatgtcttactactttaattagaagatatagtagaattgtttggaatcaatttgtccag
catcttgaatattaccaactgaagtctctgtccggtaacaacgctgcgactaaattgaat
tctgaaactcctcaaccaaagagtataccctcatgctatgcactaactcttgtccagtgc
ttcaacatgtatctagaatatgaatttgatagtacaccatgcataacggtgatggctctt
ttgcttaaaactcttcaaaaaatatctgcaatcgcagaatctcattccggccaacttatc
cctctattcttgaaatttttgggctatactgatgttgacaaattcagtgttgaatcattt
agtgagtataagtgcaaaagaaaggaatggagatcagttctcaaagaatggttgagctta
ttgaaactaatgcacaattcccgatctttgtataaaagtcaacttctcaaggatgttcta
atgagcaggcttcttgatgaagtcgaccctgatatacagttgaacgttatagattgttta
ttaaactggaaggacgactacctcattccatatgatcagcatctaaaaaacctgatcatt
tcaaggaatattcgtgaggaactcactacctgggctgtttctaaagagtctgaatatatt
caggaagaacacagggctcagttaattcctgttgttgttagattgttagcaccaaaagtg
aggaagataaaaacacttgcattacataagcatgcaggtatgaacattcgaagggcaatc
ctttgttttttagcacaacttgaagttgatgatcttcatctcttcttttctttactgttg
aaaccattgttatggaaccatcatggagtcaatgttctagatggttattctgatggtata
tgcagcagattttcaggccaatggcagtcgcttatacctttgaattgttcaatcactgaa
gccattgcaaatatatcattgaagaggaaatacggattcttatatgtattagaagatgtc
cttaaaacctttgatgagatacacatcaggccatttcttaggccattaatgacatttgtt
gtcttgattcttgagaattgcatgtcaaacatcaaaaatgaagttggcagaaagatttgt
gcttcagaaaaatgtgttgctggggatttggaggttgatgttgcagaaaattcagcacat
aatttccttgtgatgagcgcatctggtaaacagttaaaggatttgcgatctttatgtttg
aagattttatcttcagctctgagcaagcatgacagccatgactttggttgcgagttctgg
gacattttcttcaattctgtaaaacctctaatagacaacttcaagaatgagggttctagc
agtgaaaaaccaagctcactattttcttgctttctggttatgagccgaagccctgtgctt
gtatcattcttaaatagggaggcaaatcttgtgcctgcaatcttttcaattcttactgta
aggactgcatctgatgccattatatcttcagtacttggttttatagagaatttgttgaac
ctggaaactgattctgatctagagaatgactctataaaagcagttttctatcctcatctt
gaagtacttgtcaagaattttcatgaacttattctgtccaacgaagattcacacaggaaa
tctgccatttggccgggaaagagagagctgaggatattcaaactgatagcgaagtatgtg
aaaagtcaatcgatagctcttccgttcctggatatattactcccttttttcaaaaggaaa
gctttagattttgatgattgcttggaagccttgcatgttatgaaggggatcctacagtat
ttacctgtcaatgttgagaagacatcagggaagattctaaagtctatctttccaatcctt
gcagttgcaggagtagatgttcagctctgcgtatgtgatattattgatagccttgcactg
attgatccatctttagcatatctggctaggcttcttcgtgacttaactgcggtatcttct
atggatattggagagtttgattatgatacaagaatcagtgcatatgagaaaattaaccca
gagttattttcttttcttggagtcaatcatgcattacttatcctgtcgcattgtatatat
tatatgtcatctgatgaattaatccttcggcaatgtgcatctaaatcattgcaagcattt
gttcagtttgcttcttcatatctaaaaacagatgcaaagaattcttacacacatgatgct
gtatgtaatcaatcatctggtccagctgtagaaacaagcattgaaaccaattggacaaag
gcctgcattctatggataataagtgatgttcttttgaagaatatgaaagaagctttgaca
aaggaaatctccatccaaaaagaatggatgactctgttgcgtgatatgatttataatctt
catgaagttccagctctgagcacatttagacctttatgtagcgaggatcctgaagttgat
ttttttaacaatatcctacacctgcagatacataggaggagaagggccttgatgcggttt
ataaatgtcattaatgctggaaatttcacagagaacattgctgtaagcatatttgttcct
ctgtttttaagtatgatgtttgaagtgaaagatgggaaaggggagcatatacgagaagca
tgcttggattcacttgcttctatttcaaataagatgcaatgggagtcgtatcgttccttc
ctaatgaaatgtttccgtgagattactgttcgtccagataaacagaaactgttagtaagg
ttgatatgtgctatattggacaagtttcatttctttgcttctaagtcttgtgaaagagat
gaagttggttcttgtgatgctctttgttctggtaatcctcaagggaatgcaatagtgaca
ttacaggatagtacttctgttaaagctattcctgaaatacaatcttatcttcaaaaaaca
gtccttcctcaaattcagaagatcctaactatggattctgaaaaggtcaacgttaatatt
agtcttgctgccctgaagttactgaaactgctaccattggatactatggactcgcaacta
tcaagcatcgttcaccacgtttgtacattcctaaagaatcgtcttgaaagcgtgagagat
gaagcacgatctgctttggctgcatgtgccaaggagttaggattggaatatttgcatttt
ataattaaagtcatgcaatcaattcttaagcgagggtatgaaatgcatgttttaggatat
agcttgaatttcatcttatctaagattctcataggaaaatcaacaggaagcttggattac
tgtttagaagaactcgtatctattgctgaaaatgacatttttggagatgttgccgaggag
aaagaggttgaaaaaattgcttcaaaaatgaaagagactaggaaaagtaaatcttttgag
actctcaaattgatttcacagagcattacttttagaacgcatgctatgaaactgctttct
cccatacataatcacattgagaagcatctcacaccaaaaataaaaaggaaacttgagata
atattgtcccatattgcatctggaattgaaagtaatccatctgcccaaactgctgagtta
tttatctttgtttatgggcttattgaagacaatattgcagctgagctctcttacagaaaa
gaaaggtctgaaactgcagaaaatgaaacgtcaagctttgatgttattgtcaaagaaaaa
ccacttcgcaaaagtgcttgttttttgaaaaattcttatctcattactggatttgccctc
gaaatgctgcataatcgtttgaagaatataaagttggacaagaacgaccagcagctacta
tcaatgttagacccatttgtcaaacagcttggttactgtctgaattctaaatttgaaagt
gttttggccgcaacattcagatgccttgctccattgtttaagcttcccctgccatcaatg
gataaagaatctgataagatcaagtcattgctcctgtctattgctcagagatctggagat
ggaagcagttcattggccctatcctgtataaagttgcttacgatgctattacggaatcct
aggatttcaatttcacatggcgaacttcacatgatcattcgatttccaatgtttatagat
attcaaacaaacccttccactttagcactctcacttttgaagacaatctttgcacgaaaa
ctagtagttcatgaaatttatgacatcattttgcgagttgctgaactaatggtcacaagt
cagtcagaaccaattcgcaggaaatgcagcgagatactcttacaatttcttctcgagtat
cagctctctgataaacgattgcagcaacatatggatttcctgctgtcaaatcttagctat
gaacatccatcgggaagagagtctgtgcttgacatgcttcatgctattttgattaaattt
cctaggagtgttatagatagtcatgtgcagacatttttccttcacctggtggtttcctta
gccaatgagcaggaccaaagggtccgttcaatggttttaactgttctaaaagaactgatc
agtcggactagtcagcagatgctgcagccaattctagaatataccctgtcatggtacttt
ggcaagaaacaatatttatggagtccatctgctgaggttattgggttattgattgaagta
tggagaggaggacttaagagacatattattggtataatgcaaactgctagaaatatcttg
aaagtttctgtagatgcagttgatatagcagaacttggagtttcaaaagaaccggtggtt
ccatgctggaaagaagcttattattcacttgttatgattgagaagatgtttcttcaattt
tcagaactttatttccaatcggattttgaggagatatggggattgatctgcaaatttttg
ttgcatcctcatttagggttgcgtaacatttccagtcggcttgtggccttgtattttact
gctgtatctgaagcatgcaaaggtgatagtgagaaaatgatccaaaagaatctttttctt
atcaatcctagcagactatttgcagttgctgtttccttcttgaagcaacttgagggacag
gtcattgatgatgcgagtggcaatatgattactcaaaatcttgcattttcaatatgcagt
ttgcattcatttgcgaaacataagagtctgacaccattgcacaaattatggtcgatgctt
gctgcttgcgagcaaagctcttaccttgatgcttttgatttactcggttcaagaaaggcg
aaaaggatcttcctgctttccaccagtgttacggcccaatcttcaacagcatctgagaat
gaagaccttcagtcactattagttaaaccgcttttgaagaggttgggaaagatagcaatg
gaaaaagagaattttcagatgaaaattgtatttaactgcataagaacgatctcctcccaa
attggcgtggaaggttcccgtgagtatgctatctacataatacttccattgtataaagct
tgtgaagggtttgctggaaaggtcgtcgaagatgagattaagcaacttgcagaagaagtt
cgtgatggtgtacgagatattttgggagttgagaacttcatacaggtctacaatcggatc
agaaagaacctcaaagggaagagagaccataggagaacccagcagaagctgatagctgta
atgaaccccatgctccatgccaagaggaagcttagagttgcagccaagcatcgagcatat
aaaagaaggaaatttgatgcaatgaagatgcgttggaaaagaacttag
DBGET
integrated database retrieval system
