Dendrobium catenatum: 110112327
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Entry
110112327 CDS
T05027
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
dct
Dendrobium catenatum
Pathway
dct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110112327
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dct03019
]
110112327
Messenger RNA biogenesis [BR:
dct03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110112327
mRNA degradation factors
5'-3' decay
Decapping complex
110112327
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_Vps41
Beta-prop_TEP1_C
COG2_C
Motif
Other DBs
NCBI-GeneID:
110112327
NCBI-ProteinID:
XP_020700177
LinkDB
All DBs
Position
Unknown
AA seq
1395 aa
AA seq
DB search
MASSGGSPAPSPSSNPTPTPPFDVQKLFKPLTPSSNPSPNPVPRGASPFLPPPSSYPAPL
LPSTSPAAPLSAFSYPPSTPPFQHRPFLHYPQAPSPIPIPNPNPNPNAGARLMALLGTAQ
PANLESAISMPSPTSPSEFSAAPGNPPILHPPPPAMLQPDPARLPSSKLPRGRRLAAGDR
AVYDVDSRLPGESQPPQLEVTPITKYISDPGLVLGRQIALNRVYICYGLKLGAIRVLNIN
TALRSLLRGHTQKVTDMAFFAEDVPLLASASIDGRIFVWKINEDFDDDSKPQITGKIVLA
LQIIGAGEGEPYHPRVCWHPHKQEVLVVGVGNYLLKIDTLKVGRIGQFSAEEPVRCLIDK
LIDGVQHIGKHDGEITDISMSQWMTTRLASASKDGKIKIWEDRKVMPIATLTPHDNHPVS
SVAFMTSPDRPDHIVLVTAGPLNRELKIWVSASEEGWLLPSDCESWKCNQTLDLRSSTEP
RLEEAFFNQFVVLSRASFILLANAKKNAIYALHVDYGPNPASTRMDYIADFTVTMPILSF
TGTSDYISDAEQIVQVYCVQTQAIQQYALDLSQCLPIPVENEVSEKHASTAFDGPISEGF
SVPHSSFGATTYDATPANSSPAPILINRSEDNKHQALSGTSEATVVHDHASSNVEPAVSA
PQLSSVDKSTGDVASSSPSLPLNLDFSEKLRAVQGVSSAGDQENLLSTGSIDSQGHDSTV
ERTLDAVVTNVPDVPLVAETSGKEKNKAIIDAIPMVPNPHALFKPDGKTAHLVTPSEILS
GAIPPAESSFPNQGIRSEELDAQKVSDKNGIVHAEVKVVDDRALIKHDYLDSEKEPREAL
ADQGKLVKHPSAEPINFVERKDFKTDERDAEGIHTLDNTVSEKLDTPSAAGKEVAEETIN
KDLPFEDSSTIGTNSQPTSDLKASRFKENLLQASATLAPVSIPFASDSLVEHGPSIGNHS
TDVLSQLRLMQELLNQLATNQKEIEKQMAEVICAPVMKEGRRVEAALGRSMEKSIKANMD
SLWAHIQEENAKQEKTERENIQQLTTLITNCINKDIPAAVERTIKKEISAVGQVLARAIT
PSIEKCISSAIGDSFQRGVTDKIVSQLEKTIGSKLEASLARQIQLQFQTSGKQTLQDTLK
SNLESSVVPAFEKSSRALFEQIDEAFQKGLTDHKAAAQQQYESAHTQLAITLRDSINSAS
SITHNLVSELADGQQKLLALFAAGNTKANPIAKQQSNGPLGHPDMALSVQQIEAPVDPTK
ELTRLISERKFDEAFTIALQRSDVSIVSWLCSQVDLHGLCSMAPLPLSQGVLLALLQQLS
CDIGAETQRKISWMTDVAVAINPTDPMITSHVRPIFEQVYNRLIHQRTLQTTTVAEASSI
RLIIHVINSVLMTCK
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atggcttcctcaggtggtagccccgcccctagccctagctccaatcccactccaactccc
cccttcgacgttcagaagctcttcaaacctctaactccctcctctaaccccagccctaat
cctgtccccaggggtgcaagtcccttcctcccacctccctcttcttaccccgctccgcta
ttaccttctacatcgccagcggcgcctctcagcgccttctcctaccctccgtcaaccccg
ccgttccagcatcgaccatttcttcactatccgcaggctccgtcccctattcctatcccc
aaccccaatcctaaccctaacgcaggcgcacgcctaatggcacttctcggcacggcccaa
cctgccaatctcgagtcagccatctcgatgccatcgccaacgtcgccttcagagttttca
gcggcgccaggtaaccctccgattctccatccgccgcctccagctatgctgcagccggat
ccggcgagacttccgagcagcaaattaccgcgggggcggcgcctggctgccggagatcgt
gccgtgtacgatgtggactcaaggttgccaggggagtctcagcctcctcagctcgaggtg
actcctattactaagtatatatcggatcctggccttgttctggggcggcagattgcgctc
aaccgggtgtacatttgttatggactcaagcttggagctattcgcgtgcttaatatcaac
acggcacttcgatccttgcttcgtgggcatacccagaaagttactgacatggctttcttt
gctgaagatgtaccattgttggccagtgcaagtatagatggtagaatttttgtgtggaag
attaatgaggattttgatgatgatagtaagcctcagataacaggaaaaattgttttagct
ctacaaattataggtgctggagaaggagaaccttatcatccacgggtttgctggcaccct
cataaacaagaagtcttagttgttggagttgggaactatctgctaaaaattgatacatta
aaggttgggagaattggacagttttcggcagaggaacctgttagatgccttattgataaa
ttaattgatggagtgcaacatattggtaaacatgatggagaaattacagatatttccatg
tctcagtggatgacaactcgtttggcttcagcatcgaaggatggaaagataaaaatttgg
gaagatcgcaaggtgatgcccattgccactctaactccacatgacaaccatcctgttagc
tcagttgcctttatgacatcacctgaccgtccagaccacatagttcttgtgactgcgggc
ccgttgaatagagaactcaagatatgggtctctgctagtgaagaaggttggcttttacca
agtgattgtgagtcatggaaatgcaatcagacgttagacttgagaagttccaccgagccc
aggcttgaggaggcatttttcaatcaatttgtagtgctgtctcgagcaagttttatatta
ctggcaaatgctaagaaaaacgccatctatgcattacatgtggattatggtccaaaccca
gcttcaacacgtatggactacatagcagattttactgttacaatgccgatcttgagtttt
acaggtactagtgactatatttctgatgcggaacagattgttcaagtttattgtgtgcag
acacaggctattcagcagtatgcattggatttgtctcagtgtttgcctatacctgttgaa
aatgaggtgtcagagaagcacgcctctactgcttttgatgggcccatttcagaaggattc
tctgttccacattcatcttttggagctacaacttatgatgcaacgcctgcaaattcctca
cctgcacctattcttataaaccgttctgaagataacaaacaccaggcactttcaggtacc
tcagaggctactgttgttcacgatcacgcttcttcaaatgtggaaccagccgtgtctgcc
cctcaactttcaagtgttgataaaagtactggagatgttgcatcttcttccccttctctc
ccattgaatctggatttttccgagaaacttcgtgctgtgcaaggtgtctcaagcgctggt
gatcaggaaaatttacttagcactggtagtattgatagccaaggtcatgattctacagta
gagaggacattggatgctgtagtaacaaatgttcctgatgttcctctggtagctgaaacc
tctggtaaggaaaaaaacaaggctataatagatgctattcctatggtgccaaatccccat
gcattatttaaaccagatggtaaaacagcgcatttggtaactccctctgagatattgtca
ggtgccattcctcctgctgaaagcagttttcccaatcaagggattagaagtgaggagtta
gatgctcagaaggtaagtgataaaaatggtattgtccatgcagaagttaaagttgttgat
gacagggctttgatcaagcacgattatttggattctgaaaaagaacctcgagaagccctt
gcagatcaggggaaattagttaagcatccttctgctgaaccaatcaattttgttgagaga
aaggactttaaaacagacgaacgtgatgcagagggaattcataccctggataatactgtt
tctgaaaaattagatacgccttcggctgcaggcaaggaagtagctgaagaaaccataaac
aaagatcttccctttgaggattcttccaccattggtacaaactcacagccaacttcagat
ttaaaagcaagcagatttaaagaaaatctcttgcaagcatcagctactttagcacctgta
tctatcccctttgcctcagattctttagttgaacatggtccctccattggcaatcattct
acggatgttttatcccaacttcgtctcatgcaggagctgttgaaccagttagctacaaac
cagaaggagatagagaagcagatggctgaggtaatttgtgctcccgtaatgaaggaaggg
agaagggtggaagctgctcttggtcggagcatggagaaatctattaaagcgaacatggat
tctttgtgggcccatattcaagaggagaatgccaaacaagaaaagaccgaaagggagaac
attcagcaattaactaccctaattaccaactgcattaataaggatatacctgctgcagta
gagaggacaattaagaaggagatatctgcagttggtcaggttttggctcgagcaatcacc
cctagcattgaaaaatgcatttcgtcagctataggcgactcttttcagagaggggttaca
gataaaatagtcagccagcttgagaaaactattggttctaagctggaagcttcattggcc
aggcaaatccagttacaatttcaaacttctggcaaacagactctgcaggatacgctcaag
tctaacctggaatcatcagtggttcctgcatttgagaaatctagcagagctctgtttgag
cagatagatgaagccttccaaaaaggtttaactgatcataaggccgcggctcagcagcag
tatgagtccgcacatactcaacttgcaataactttgagggattcaattaactctgcatca
tccatcacccataatcttgtcagtgagttagctgatggccagcaaaagctcttagccctc
tttgctgcaggaaacacaaaagctaatcccattgcaaagcagcagagcaatggcccatta
ggccatcctgatatggcattgtctgtccagcagattgaggcccccgttgatcccacgaag
gagcttacaagactgatatctgaacgcaaatttgatgaagcatttacaatagctctacag
agaagtgatgtttctattgtgtcttggttatgctcacaggtagatctgcatgggctttgt
tccatggctccactcccgctcagtcaaggcgtcctgctcgcccttcttcagcagctctcc
tgtgacatcggcgcggaaactcagcgtaagatcagctggatgactgacgtcgccgtcgcc
atcaaccccacagatcccatgatcacatcccatgttcgccccatattcgagcaagtttat
aacagacttatacaccagagaacactccagacaaccacagttgctgaagcttccagcatt
cggctcatcattcatgtcataaattctgtcttaatgacctgtaaatga
DBGET
integrated database retrieval system
