KEGG   Dendrobium catenatum: 110112335
Entry
110112335         CDS       T05027                                 
Name
(RefSeq) THO complex subunit 3 isoform X1
  KO
K12880  THO complex subunit 3
Organism
dct  Dendrobium catenatum
Pathway
dct03013  Nucleocytoplasmic transport
dct03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dct00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110112335
  09122 Translation
   03013 Nucleocytoplasmic transport
    110112335
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dct03019]
    110112335
   03041 Spliceosome [BR:dct03041]
    110112335
Messenger RNA biogenesis [BR:dct03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     110112335
Spliceosome [BR:dct03041]
 Complex C
  Other components
   EJC/TREX
    110112335
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    110112335
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_CDC20-Fz WD40_Prp19 WD40 Beta-prop_WDR3_1st WD40_WDHD1_1st Beta-prop_EML_2 ANAPC4_WD40 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd WD40_Gbeta WDR55 Beta-prop_WDR3_2nd Beta-prop_WDR19_1st Beta-prop_TEP1_2nd Beta-prop_NOL10_N Beta-prop_RIG_2nd Beta-prop_Aladin Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd DSE1_N Beta-prop_Vps41 WD40_MABP1-WDR62_2nd eIF2A Beta-prop_IFT140_1st Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_WDR35_TULP_N WD40_RFWD3 Beta-prop_HPS5 Beta-prop_EIPR1 Beta-prop_DCAF12 TRM82_WD WDR90_beta-prop_4th Tricorn_2nd NBCH_WD40 WD40_MABP1-WDR62_1st PAC11 Beta-prop_IFT80_2nd Beta-prop_WDR41 Beta-prop_Nup120_160 Beta-prop_WDR11_1st WD_LRWD1 Me-amine-dh_H CNH DUF7099
Other DBs
NCBI-GeneID: 110112335
NCBI-ProteinID: XP_020700190
LinkDB
Position
Unknown
AA seq 314 aa
MEETAVNFKNLGIREFQGHKKKVHSVAWNCSGTKLASGSVDHTARVWNIDAHGHGKVKDI
ELKGHTDSVDQLCWDPKHADLLATAAGDKTVRLWDARSGKCSQQVELSGENINITYKPDG
THLAVGNKEDELTILDVRKFKPIHRRKFNYEVNEIAWNTTGELFFLTTGNGTVEVLAYPS
LIILHTLVAHTAGCYCIAIDPVGRYFAVGSADSLVGLWDISEMLCVRTFTKLEWPVRTIS
FNYTGEFIASASEDPFIDISNVQTGRSVHQIPCKAAMNSVEWNPKHNLLAYAGDDKNKYQ
ADEGVFRIFGFEST
NT seq 945 nt   +upstreamnt  +downstreamnt
atggaagaaacagccgttaatttcaaaaatcttggtataagagagttccagggccacaag
aagaaggtgcattctgtggcttggaactgctccggcacgaagctagcctcgggctctgtg
gatcacactgcacgtgtttggaatatcgatgctcatggccatgggaaagtcaaagatatt
gaactgaaagggcacacagatagtgtcgatcaactttgttgggaccccaagcatgctgac
ttacttgcgactgcagcaggggataaaacagttcgtctttgggatgctcgtagtggaaaa
tgctctcaacaggttgaactaagtggagaaaacatcaatattacatacaaacctgatggg
acacacttggctgttggaaacaaggaggatgaactaacaatattggatgttaggaagttt
aagccaatacacaggcgcaagttcaattatgaggtaaatgagatcgcatggaatacaact
ggagagctattctttcttaccaccggaaatggcactgttgaagtgcttgcctatccatct
ttgattattcttcacaccttagtggctcacacggctggctgctattgcattgccattgac
ccagttggaagatactttgccgttggaagtgctgattctttggttggcctgtgggacata
tcagaaatgctgtgtgtacgaacattcacaaaacttgagtggcctgtgagaaccatcagc
ttcaactacacaggagaatttattgcttctgccagtgaggatccattcattgatatttca
aatgtgcagactgggcgatctgttcatcagattccatgcaaggctgcaatgaacagtgtg
gagtggaacccgaagcacaacttgcttgcttatgcaggagatgataagaataaatatcag
gctgatgaaggtgtcttccgcatatttggttttgagagtacttga

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