Dendrobium catenatum: 110112608
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Entry
110112608 CDS
T05027
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
dct
Dendrobium catenatum
Pathway
dct03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110112608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dct03021
]
110112608
03019 Messenger RNA biogenesis [BR:
dct03019
]
110112608
Transcription machinery [BR:
dct03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110112608
Messenger RNA biogenesis [BR:
dct03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
110112608
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
DUF7137
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
110112608
NCBI-ProteinID:
XP_020700554
LinkDB
All DBs
Position
Unknown
AA seq
1101 aa
AA seq
DB search
MEMEATRRSILDRSREPGAKKPRLAEESERDRGHSVGVTSDRSRSFSQARPAVGSGGGNP
RFKASEREEREEVGRGGASYQQQQQELVAQYRTALTELTFNSKPIITNLTIIAGESLHAA
KSIAATVCDNVLEVPTEQKLPSLYLLDSIVKNIGGDYIKYFAARLPQVFCKAYKQVDPSI
HHSLRHLFGTWKGVFPTSCLQSIENELGFQHVVNGSSGSTGTRPDAHSQRPSHSIHVNPK
YLEARQRFQQSTRGKEISSEDIDEVVAPVDDTERSIRNPSAGSIRQWSELSNKDVQLPQR
EQPSDFINERKGYKDIRDPVFSSQVPRQQDMGVGRISGRVKDLDELRRTVDQISELDEPN
KPYFETGVAAQSTVYRRNGFDANHAYGSYRALKSAPNNSQVASIHSNRTNWPVSKNWKTS
EEEEYVWDEMGSRSADYEGARNKRNSLSTDDQDKLPGLQSREWMPMETDQVDSRLKKIDA
VNPRSKTVGIEDRVHFTSDGEEHYSQQHHQEIEPRVKKGTWPLPLRDRLLPALGLDHTIS
TVSGQTECRPTPLGGALSTNNDNSIMPKSGLQSTLPSSLGSSIDGLGSGGVLGQQRQLLL
RSPSPVFPSIPSAPLQKQKLRGLMDQDYLPVHSSQIGQKSSQLADQLNRDPFAPAIHDSF
PVLSEKPVQKTHATFNSQPSLPLTSLPVLSPYPEQHRSSLRQSQPDPLMQAVQNETSAPV
SQGFSPNKSKGLSGVMHSNCPIDVSRQSNNSNLLASILSTDVLPDKPASGLNIIHPPLPS
GPPPAQALTSSASLPTSFAEMTSSHGIAPAFAPLFLGGGRLPPLPPGPPPSISLVGTSSQ
TINSASIGLNPLSSLLSSLVAKGLITSASTKLPTITSSQMSKESLSQNSDLDASTSTPPL
SSKELIICCEASSPHRASLDDSLIGIQFKTEIIREFHPLVIDSLLDNLKHRCMKCGLRLR
HQHELQSHLDWHNSNDSEISSMDKACRRWYSSISSWISGDVTPPCGPVPIIPIEAAPSQV
IPEPMVTADERQSICALCGEPFEDFYSIQRDEWMYKGTTYLNLTDEKCVSRGMENSIVEV
PIVHAKCISASAVNGDFTRYS
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atggagatggaggccacacgtagatctatcttggaccgctcgagggagccaggcgcaaag
aaacctagactggcagaggagagcgagcgggaccgcggccattccgtcggcgtcacatct
gatcggagtcgttccttttcgcaggccaggccggcagtcggcagcggcggaggcaacccg
agatttaaggcgagcgagagggaggaaagggaggaagtgggaagagggggagcgtcttat
cagcagcagcagcaggagttggtggcgcaatacaggacggcactcacggagctgactttt
aattcgaagcctattattactaatcttacgatcattgccggggagagcctacatgctgct
aagtctattgctgccactgtctgtgacaatgttcttgaggttcctactgagcaaaagttg
ccatctttgtatcttcttgatagcatcgtgaagaatattggaggagattacattaaatat
tttgcggcaagattaccacaggtattctgcaaagcctacaaacaagttgacccttccata
catcatagcctgaggcatctatttggaacatggaaaggggtattccccacttcttgcctc
caatcaattgagaacgaattgggctttcaacatgttgtaaatggttcatctggaagcacc
ggaacaaggccagatgctcattcacaaaggccatcccacagtattcatgttaatccaaag
tatttggaggctagacaacgctttcagcaatccacaagggggaaggaaataagcagcgaa
gacattgatgaagttgttgcaccagttgatgatacagaaaggtccattcgaaatcctagt
gctgggagtattaggcagtggtctgaattatctaataaggatgttcaactccctcaaagg
gaacaaccaagtgactttattaatgagagaaaaggttacaaggatataagagatcctgtt
ttttcttctcaagttccacgacagcaagatatgggagtggggaggatcagtggccgggtt
aaagatttagatgaactaaggaggaccgttgatcagattagtgagttagatgaaccaaac
aaaccctattttgagaccggtgtggcagctcaatcaacagtctatagaagaaatggtttt
gatgcaaatcatgcttatggtagctatcgagcattaaagtctgctccaaataatagtcag
gtagcttcaatccattctaatagaacaaactggccggtttctaaaaattggaaaacttct
gaggaggaagagtatgtctgggatgaaatgggttccagatcagcagattatgagggagca
agaaataaaagaaacagtttgagtactgatgatcaggacaagttacctggcttgcaaagt
cgtgagtggatgcccatggagactgatcaagttgactccagattaaaaaaaattgatgca
gttaatccgcgttcaaaaactgtaggaatagaagatagagttcatttcacaagcgatggt
gaagagcactattcacaacaacatcaccaagagattgagccgagagtaaagaagggtaca
tggcctctgcctctgcgtgaccgactactgccagctcttgggttagatcatacgatatca
acggtttcaggtcaaacagagtgcaggccaacacctcttggtggtgctttatctactaat
aatgataattcaatcatgcccaagtctggattacaatctactcttccttcaagcttgggc
tcttctatagatggattaggatcgggtggagttttagggcagcagaggcaactgcttctg
cgatctccttcacccgtctttccttccatcccatctgctccccttcaaaaacagaaacta
cgtggtctaatggaccaagattatcttccagttcactcatctcaaataggtcagaaatca
agccagcttgcagaccagttaaacagggatccatttgcaccagccattcatgactctttt
ccagttttatcggaaaaaccagttcaaaagactcatgcgacatttaattcacagccttcc
ctgccacttacttctttgcccgtcttatcaccatatccggagcaacataggtcttcattg
cgacagtctcagcctgatccattaatgcaggctgtccagaatgagacctcagcacctgta
tcccagggttttagccctaataagtcaaaaggattgtctggtgtgatgcactctaattgc
cccattgatgtttctaggcaatccaacaacagtaatttattggcttcaattttgagtact
gatgttttgcctgacaaaccagcaagtggtttgaatataatacatcctccccttccaagt
ggtcctccacccgcacaagcgttgacctcctctgcttctttgccaacttcattcgcagaa
atgacatcttctcatggcattgctcctgcttttgcacccctttttctaggaggaggcagg
ctacctccattgccacctggtcctccaccttcaatatcactagtaggcacctcttcacaa
accatcaactcagctagcattggtctgaatccactttcgagcctcctgagctcattagtt
gcaaagggcctaataacctcggcatcgacaaaattgccaaccattacttctagtcagatg
tcaaaggaaagcttgagtcagaacagtgatctagatgcaagtacatctaccccaccgctt
tcttcgaaagagcttataatctgttgtgaggcatctagtccgcaccgagcctccttggat
gacagtctgataggtattcaattcaagactgaaattattcgcgagtttcatcctttggtg
attgatagcctcttagataatctaaagcatcgatgcatgaaatgtggtctgcgattgaga
catcaacatgagcttcagagtcacttggattggcataactcgaatgactcagaaataagt
agtatggacaaagcgtgtcggagatggtattcaagcatcagcagctggatttctggagat
gtcacgccaccatgtgggccagtacctatcattcccatagaagccgcaccttctcaagtg
ataccagagcctatggttactgcagacgaaaggcaaagcatatgtgctctttgtggagaa
ccatttgaggacttctattctattcagagggacgaatggatgtacaaagggactacttat
ctgaacctaacggatgagaaatgtgtttccagaggcatggaaaatagcatagtggaggtc
cccattgtgcatgctaagtgcatttcagcatctgccgttaatggagattttactcggtac
agttga
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integrated database retrieval system
