Dendrobium catenatum: 110113825
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Entry
110113825 CDS
T05027
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
dct
Dendrobium catenatum
Pathway
dct03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110113825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dct03019
]
110113825
03041 Spliceosome [BR:
dct03041
]
110113825
Messenger RNA biogenesis [BR:
dct03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
110113825
Spliceosome [BR:
dct03041
]
Complex B
Other components
Prp19-related factors
110113825
Complex C
110113825
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_15
TPR_5
UTP6_C
DUF5858
HTH_psq
PPR
Motif
Other DBs
NCBI-GeneID:
110113825
NCBI-ProteinID:
XP_028552531
LinkDB
All DBs
Position
Unknown
AA seq
913 aa
AA seq
DB search
MAEPSPSTSKEAVPISAELYPSEDDLPYEEEILRNPFNLMLWWRYLVARADAPFDKRRVI
YERALKALPGSYKLWQAYLRERLDRVRSFPISHDLYGHLNNTFERALITMHKMPRIWIMY
LTSLTEQRLITRARRTFDRALCALPVTQHDRIWSPYLTLVSLPGVPVETSLRVYRRYLLF
DPSHIEDFIDFLLRSQLWQEASERLASVLNDDSFHSIKGKNRHQLWLELCDLLTCHATEV
SGLKVDAIIRGGIRKYTDEIGRLWTSLADYYVRRSLYEKARDVFEEGLASVVTVRDFSVI
FDSYAQFEQSALAAKIETTENGSDGSDGDEGGDNNGIDKLSKKFLEDFWLNDDDDADLRL
ARLESLFDRRPELLNSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTFTEAVRTVDPMKAV
GKPHTLWVSFARLYENHNDLVNARVIFDKAVQVNYKTVDNLASVWCEWAEMELRHKNFQA
ALELMRRSTAEPSVEVKRRVAADGNEPAQMRLHKSLRLWSFYVDLEESLGTLESTRTVYE
RILDLRIATPQIILNYAFLLEEHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRY
GKTKLERARELFEHAIEKAPAQDVKPLYLQYAKLEEDYGLAKRAMKVYDQAVKAVSDGEK
LSMYEIYIARAAEIFGIPKTREIYEQAIESGLPDNAVKTMCMKYAELERNLGEIDRARAV
FVFASQFADPRSDSDFWKKWNDFEVQHGNEDTFREMLRVKRSVLASFSQTHLILPEYLMQ
KDQKLNLEEAVDTLKRAGVPEDEMASLERQLAPSSANLSAKDGSRMMNFISAGVESQPNN
EKVNANNEDIELPEESDSDDEKIEIAQKDVPATIFGELAHKVTVDQKEVAGSEESGVNAP
LGALERIKRQRRQ
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaccatcgccttcgacgtcgaaggaagctgtgcccatatctgcggaactctat
ccatccgaggatgacctcccctacgaagaagaaatcctccgcaaccctttcaacctaatg
ctgtggtggcgctaccttgtagcccgcgccgatgcgccgttcgataagcgccgcgtcata
tacgaacgcgccctaaaggccttaccggggagctacaagctgtggcaagcctatctccgg
gagcggcttgaccgcgttcgctcttttccaatctcccacgacctctacggccatctcaac
aacaccttcgaacgtgccctgattaccatgcacaagatgccccgcatctggatcatgtac
ctcacttcccttaccgagcagcgcctcatcactcgtgcgcgccgcaccttcgaccgtgcc
ctgtgcgccctgccagtcacccagcacgaccgcatatggtcaccgtatcttactcttgtc
tcgctccccggcgtccccgtggagacctccctccgcgtctaccgtcgttatctccttttc
gacccttcccacattgaggacttcatcgacttcctactccgctcccagctttggcaggag
gcttccgagcgcctagcatccgtcctcaacgacgattccttccattccattaagggcaag
aaccgccaccagctctggcttgagctctgtgacctcctcacatgccacgctacggaggta
tccggtctcaaggttgacgccatcatccgcggggggatccgaaagtacaccgatgagatc
ggtcgcctatggacctctcttgctgattattacgtccgccgcagcctttatgagaaggca
cgcgatgtcttcgaggagggcctcgcaagtgttgtcactgtcagagatttctccgtcatc
ttcgactcttatgcccagtttgagcagagcgccctcgctgctaagattgagacaactgaa
aacggctcagatggcagtgatggcgatgaaggcggtgataataatggaatcgacaagctt
tcaaagaagtttcttgaagatttctggttaaatgatgatgacgatgctgatcttaggctg
gcgaggcttgagagtctctttgatcgtcggccagagctgctgaacagtgtgttattaagg
cagaacccacataatgtagagcagtggcacaggcgggtgaagctttttgagggaaatccc
actaagcagatattaactttcactgaagcagttaggacagtggacccaatgaaggcagtg
gggaagcctcacacattgtgggtttcatttgcacggttgtatgagaaccataatgatctg
gtgaatgctagagttatatttgacaaggctgtgcaggtcaactacaagacagttgacaat
ctggcaagtgtttggtgtgagtgggctgagatggagctgaggcacaagaatttccaggca
gcacttgagctgatgagaagatctactgcagaaccctccgttgaggtcaaaagaagagtt
gctgcggatggtaacgagcctgcacagatgaggttgcacaagtctttgagactctggagc
ttttacgtggatctggaagagagtttaggaacgctggaaagtacacgtactgtgtatgag
agaatacttgatctgaggattgctacaccgcaaatcatactgaattatgcctttcttctt
gaggagcacaagtactttgaagatgcatttaaggtgtatgaaagaggcgtcaagatcttt
aagtaccctcatgtgaaagatatatgggtcacatacctctctaagtttgttaagagatat
ggaaagaccaagctagagcgggcaagagagctttttgagcatgcaattgaaaaggcacct
gcacaagatgtgaagccattatatctgcaatatgctaaactggaggaagactatggacta
gcgaaacgggcaatgaaagtctatgaccaagctgtaaaagctgtctctgatggtgaaaag
ctgagtatgtatgagatctacatcgctcgtgctgctgaaatttttggcattccaaaaaca
agggaaatttatgagcaagccattgagtctggccttccagataatgctgttaaaacgatg
tgcatgaagtacgctgaacttgagaggaatctgggagagattgatcgggctcgtgcagtt
tttgtgtttgcatcacaatttgctgatccacgttctgattctgatttttggaagaagtgg
aatgattttgaagtccaacatggtaatgaggatacattcagggagatgcttcgtgtcaaa
cgcagtgtcttagctagctttagccagactcatttgatccttcctgaatatttaatgcaa
aaagatcagaaattgaacctagaggaagcagtggacactcttaagagggccggagttcct
gaagatgaaatggcttctttagaaagacaattggctccctcctctgctaacttgtctgct
aaagatggaagcagaatgatgaacttcataagcgctggagttgagtcacagcctaacaat
gagaaggtaaacgctaacaatgaggatatagagttgccagaagaaagtgattcagatgat
gaaaaaattgaaatagctcaaaaggatgtccctgctactatctttggagaattggcacac
aaagtcactgtagatcagaaggaagttgctggttctgaggaaagtggggtgaatgctcct
ttaggtgcccttgagagaataaagagacaaagaaggcagtag
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integrated database retrieval system
