Dendrobium catenatum: 110114772
Help
Entry
110114772 CDS
T05027
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
dct
Dendrobium catenatum
Pathway
dct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110114772
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dct03019
]
110114772
03012 Translation factors [BR:
dct03012
]
110114772
Enzymes [BR:
dct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110114772
Messenger RNA biogenesis [BR:
dct03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110114772
Translation factors [BR:
dct03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110114772
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
nSTAND3
AAA_19
ATPase
T2SSE
Dicer_dimer
PhoH
AAA_23
Motif
Other DBs
NCBI-GeneID:
110114772
NCBI-ProteinID:
XP_020703422
LinkDB
All DBs
Position
Unknown
AA seq
1161 aa
AA seq
DB search
MPSGLRPGLVILLRTASSAVKFRSRSTHSGLPYLFRFAISSNAGDFGQRCSAGESRGFCG
YAAEQYSDDEYECDFENQKPSSSVANIDEWRWKLSMLLRNPEEQEIVSRDKRDRRDYEQI
SNLAKRMGLYSELYGKMVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLLQEHID
RIELASSCKYSQMLEGTSSTVDTKEAVDEKQDTLVDDILMEKILQRRSWRMRNLQRSWQE
SPEGIKMLNSRRSLPAYMEKESLLSAIARNQVTIISGETGCGKTTQLPQYVLESEIESGR
GAFCNIICTQPRRISAMTVAERVSTERGENLGETVGYKVRLEGMKGKNTHLLFCTSGILL
RRLLVDRNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLNAEMFSN
YFGGAPTIHIPGFTYPVRALFLEDILEKTGYKLTSFNQVDDYGQDKLWKTQRQLLPRKRK
NQITTLVEDVLKNSNYETYSARARDSLASWTPDCIGFNLIEAVLCHICRKEGPGAVLVFM
TGWDDISCLRDQLKAHPLLGDPNRILVLTCHGSMATSEQKLIFQKPPPNVRKIVLATNMA
EASITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISKASARQRRGRAGRVQPGECYHL
YPKCVYDAFADYQLPELLRTPLNSLCLQIKSLQLGSITQFLSASMQPPEPLAVQNAVEFL
KMISALDENENLTNLGRYLSMLPVDPKLGKMLIMGAVFRCFDPVLTVVSGLSARDPFLLP
QDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDADREGSAYEYCWRNFLSSQTLQAIHS
FRKQFSFILRDAGLLETDASTCNSLSHNQSLVRAIICSGLFPGISSVVHREKSLSFKTMD
DGQVLLYANSVNAKYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSMLILFGGALKKGEMA
GHLKMLDGYIDFFMDPSLAECYWKLKEELNTIIQKKLEDTSLDIHKIGKYLLLSIQELVS
GDLCEGRFVFGRETKRIRTCTTSEDSTSKFTKGGTNPKSLLQTLLMRAGHTPPKYKTKHL
KTNEFRAMVEFKGMQFVGKPKRNKQLAERDAAIEALEWLTHTTADDSQPKDDEDSPPDIT
DNMLKLLNRRRRRRCSRQGSG
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgccttctggattgaggccgggactagtaattctgctgagaactgcaagttcagcggtg
aaatttcgtagtcgcagcacgcacagcggtctcccttacctattccgttttgcgatatca
tcaaatgccggagattttggacaacgttgctcagctggtgagagccgggggttttgtgga
tacgccgcggagcagtactcagatgacgagtacgagtgtgacttcgaaaaccagaagcca
tcttcttcagttgccaacatagatgagtggaggtggaaactaagcatgcttttacgtaat
cctgaagagcaagaaattgtttccagagataaacgagatcgccgtgactatgaacaaatc
tctaaccttgcaaaaaggatggggctctatagtgaattatatgggaagatggttgttgcc
agcaaagttcctcttcctaattatagacctgatcttgatgacaaacggccacaaagagag
gttgtgattcctctcagtttacaaagacgagttgagggtttattgcaggaacacattgat
agaattgaactagcatcttcttgcaaatatagtcaaatgttggaaggaacatcttctact
gtagataccaaagaagctgttgatgaaaaacaagatactttagttgatgacatacttatg
gaaaagattcttcagaggaggagttggcgtatgcgtaacctgcaacggagttggcaggag
tctcccgagggcattaaaatgctcaattccagaagatctcttcctgcatacatggaaaag
gagagtcttttgtctgcgattgctcggaatcaggttactataatttctggggagacaggg
tgtggtaaaacaacacaacttcctcagtatgtattagaatctgagatagaatctggtcga
ggagcattttgcaatatcatctgtacccaacctcgtagaatatctgctatgactgtggca
gaaagggtttctactgaaaggggggagaatcttggtgaaacagttggttacaaagttcga
ttagaaggtatgaaaggaaaaaacacacatctgcttttttgtaccagtggcattttactg
agaagattgttggtggatcgcaatttgaatggtgtaacccatgtttttgttgatgaaatt
catgaaagaggcatgaatgaagatttcttgttgattgtgttgaaagatcttcttccccgt
cgtcgtgatttaaggttgattttaatgagtgctacattgaatgctgaaatgttttcaaat
tactttggtggagctcctacaattcatattccaggttttacatatccggttagagcactc
tttcttgaagacattttggaaaaaactggatataagctaacttcattcaatcaagttgat
gactatggccaagataagttatggaaaacacaaagacagctgcttcctaggaagagaaag
aatcagatcaccacgctagttgaggacgttcttaagaattcaaactatgaaacatacagt
gcgagggcacgagattccttggccagctggactcctgattgcattgggtttaatctcatc
gaggctgtgttatgtcatatatgtcggaaggagggaccaggtgctgttttagttttcatg
acaggctgggatgatatcagttgcttgagggaccaacttaaggcccaccctctgttagga
gatccaaacaggattttggttctcacttgtcatgggtcaatggccacatctgagcaaaag
ctcatatttcaaaagccacctcccaatgtacgcaagatagttcttgcaacaaacatggct
gaagcaagtattacaattaatgatgttgtttttgtggttgactgtggcaaagcaaaggag
accacatacgatgctttaaacaatacaccatgcttgctgccttcctggatttctaaagct
tcggcgcgacaaagaagaggtcgagcaggtcgtgttcaacctggagaatgctatcatctc
tatcctaaatgtgtttatgatgcctttgcagattaccagcttcccgaacttctgagaact
cctttaaactccttatgcctgcaaataaaaagcttgcagcttggttctataacgcagttt
ttgtcagcttcaatgcagcctccagagccgttggctgtgcaaaatgcagttgagttctta
aagatgataagtgcattagatgagaatgaaaatcttacaaatcttggaagatacctctca
atgcttcctgttgatccaaagctaggcaagatgcttattatgggtgctgtgtttcgctgc
tttgatcctgttctcacagtagtgtcaggattgagcgctagggacccttttctgcttcct
caagacaagaaggatttggcaggaacagcaaaatcaagattttctgcaaaggattacagc
gaccatatggctcttgtccgcgcatatgaaggatggaaagatgctgacagagaagggtct
gcttatgaatactgttggagaaacttcctttcatcccaaaccttgcaagctatccactca
tttcgaaagcaattcagttttattttaagagatgctggtttgcttgaaacagatgccagc
acctgtaacagcttgagccataaccagtcacttgtccgtgctatcatatgctctggactc
tttcctggaatatcttctgtagtgcatagagagaaatctctttctttcaaaacaatggat
gatggccaggttctactttatgctaactctgtgaatgcaaaataccaaaccattccgtac
ccatggttagtatttggtgagaaagtgaaagtaaatgcagtctttattcgtgattccact
ggtgtatcagattctatgttgatcctgtttggtggtgctctaaaaaaaggagaaatggct
ggacacttaaagatgttggatggctacatcgacttcttcatggatccaagtttggcggaa
tgctattggaagctcaaggaggagcttaatacgatcatccaaaagaagcttgaagacacc
agcttggatatccataagattggcaagtacttgttgctttccattcaggagctggtctct
ggggacctttgtgaagggaggtttgtatttggccgagaaacaaaacggatacgaacctgc
actaccagtgaagacagcaccagcaaattcacaaagggtggcacaaatcctaaaagcctt
ttgcagacattactaatgcgagcagggcacacccctccgaagtacaagacgaagcatctg
aagactaatgagttcagagctatggtggaattcaaagggatgcagtttgtgggtaagccc
aaaaggaacaagcagctggcagaaagggatgcggccattgaggctcttgagtggctgaca
cacaccactgccgatgatagtcagcccaaagacgatgaggactcgcctcctgatattact
gataacatgctgaagctccttaataggagacggcggcggcggtgctcgaggcagggttca
ggttga
DBGET
integrated database retrieval system
