Dendrobium catenatum: 110114930
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Entry
110114930 CDS
T05027
Name
(RefSeq) zinc finger CCCH domain-containing protein 27 isoform X1
KO
K13192
RNA-binding protein 26
Organism
dct
Dendrobium catenatum
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
dct01009
]
110114930
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dct03019
]
110114930
03041 Spliceosome [BR:
dct03041
]
110114930
Protein phosphatases and associated proteins [BR:
dct01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
110114930
Messenger RNA biogenesis [BR:
dct03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
110114930
Spliceosome [BR:
dct03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
110114930
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
PWI
zf_CCCH_4
RRM_Nup35
ApeP-like
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
110114930
NCBI-ProteinID:
XP_020703640
LinkDB
All DBs
Position
Unknown
AA seq
1085 aa
AA seq
DB search
MKFEKKALSQYLANNLKPFSNTFWCKLALRIACRTAADPNILADYVVALLKNDVPAAELQ
KMCADRLEVFLGHSSMSFTTKLFEALQGGSLRSTNVNLDVTNSPEPSMSNATVETQDMKS
FLLKEDNQPSSSEPLSDPEDKENSDDDDDRNHKHRKRDARENSFDNAIQEQPIRRLGKKR
SQNFDTGQLYMEAGSQSREIQKEYSSSMDRVVPSRLERRHFVIPPSMRSSSDLNSRSRLS
TSFRTDPSPRLDLSTSVCLASLGRGRGRNLAAWSQPDSRFNSLDSLDFTSHMASQRPVHP
GLFVGPSLQGAGSSHNASWGAFGFIHGISNGIMDPLHPLGLQIGMPRQRCRDFEERGFCL
RGDMCPMEHGVNRIVVEDVQSLSQFNLPVSIPNSHAVGAQAGVGPLNAGPTSSTLMANKT
MLSKNSKSAANEDTLRLNGPTCTLGGEADVYDPDQPLWNNNIDSSAALLRLPSANIEDES
LWDGDTSRKTSQLSDGNECDLPSRNLIANIGPQAAGSSVWGRIGTGSKSETGLKFEINNS
DDGHPAKEMREGKEATVSCSLPLDQSQLLSSEEFGSKMATTQPVSTLRTDFEHKGGRKQQ
KARRTLYVCGIPQKNNKREALLSHFQKFGEVIDIYIPLNSEKAFVQFCKREVAEAALNSP
EAVMGNRFIKLFWANRDRISDEGHDSGSVEAKPLQYPKGVVNSARMRPPAVEIGKENLSS
ASQRESNTNFVEASVPFVGPQKGVILNGTKSLTSPKKKLESLELLEELRRKQELLAQKRD
EFRRQLVKFERQTSIKKSDGSLEQAAKKQKINLGSRSAKDAEAGSTTISVSGESQKAGKS
LERSNLTEIVVSPSSKTNLATMQQANQIVKQVNRTPAAYASRFKLDNRPTSFRVLPPLPA
KLANVSVLKDHFSKFGDLAYVVFEDPEEIENSDIQDPEKIVVCVTFHTRSSAERAYQAGK
YCEGCSLKFAWVTASSAAGKDCHVEEIPSNAITFKAEDDDIKTESKSSSSSSAGEPICIP
MAVSSSLSAGQLTCIPRSEVDAKKTEDHGDVEGRNRTSSSVSNSLIATLDSSPTIPMHGS
ENHYQ
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgagaagaaggcgctgtctcaatacctcgcgaacaacctcaaacccttttct
aacacgttttggtgcaaattggctttacggattgcttgtaggactgctgcagaccctaac
attcttgctgattatgtcgttgcattgttgaaaaatgatgtacccgcagcagagttgcag
aagatgtgtgctgatcgtctggaagtttttcttggccacagctctatgtcttttactaca
aagttgtttgaggccctacaaggggggtctctccggagcacaaatgtaaacttggatgtc
acaaatagtcctgaaccatctatgtctaatgccacagtggagactcaggatatgaaaagt
tttttattgaaggaagacaaccaaccttcttcttccgaaccacttagtgatcctgaagac
aaagaaaacagtgatgatgatgatgaccgcaaccataaacatcgcaagcgggatgctcgt
gagaattcgtttgataatgctattcaggaacaacctataaggaggcttggaaaaaagaga
agccaaaactttgatactgggcagctctatatggaagcagggagtcaatcccgtgaaatt
caaaaggaatacagttcctctatggatagggttgtcccttcccgattagaaagaaggcat
tttgtcatcccaccctcaatgcgttcttcatcagatttaaactccagatcaagattaagc
acttcctttcgaactgaccctagccctcggcttgatttgtctacttctgtatgcctggcc
tctcttggacgtgggagaggaagaaatttagctgcatggagccaacctgattcaagattc
aactcactagattcgcttgattttacttcacacatggcttctcagaggccagttcatcct
ggtctttttgttggcccaagcctacaaggtgctggaagttcacataatgcatcttggggt
gcatttggattcattcatgggatttctaatggtatcatggatccgcttcatccactaggt
ttgcagattggcatgcctagacaacggtgtagagattttgaggaacgaggattttgcctg
agaggtgacatgtgcccaatggagcatggtgtaaatcggattgttgttgaagatgttcag
agcctttctcaattcaatcttccagtttccatacctaattcacatgcagtcggagcacaa
gctggtgtggggcccttaaatgctggtcctacgtcttcaactcttatggcaaacaaaact
atgctttctaaaaatagcaaatctgctgcaaatgaggatacactaaggttgaatggtcct
acctgtactttgggaggtgaagcggatgtatatgatcctgaccaacctttatggaataat
aatattgattcatcagctgctcttctgaggttgccttccgctaacattgaagatgagtct
ttatgggatggtgatacttctcgcaagacttcacagttatctgatggcaatgaatgtgac
ctaccaagcagaaatttgatagctaatattggacctcaggctgcaggttcctcagtttgg
ggccgaattggaactgggagtaagtcagaaactggtttaaagtttgagattaataattct
gatgatggacatcctgcaaaagagatgagggaaggtaaagaggctacggtttcttgtagt
cttcctttagatcaaagccaacttcttagttctgaggagtttggttcaaaaatggctacc
actcaacccgtctcaactctacgaactgattttgagcataagggtggaagaaaacaacaa
aaagcacgccgaactctctatgtgtgtgggattcctcagaagaacaataagcgggaagca
cttctttcacattttcaaaagtttggtgaagtcatagatatatatatacccttaaacagt
gaaaaagcctttgtgcagttctgcaaaagagaagtggcagaagcagctctaaattctcca
gaggctgtgatgggaaaccgtttcatcaaactattctgggccaatcgagatagaatttca
gatgagggacacgatagtggtagtgttgaagctaaacctctgcaatatcctaagggggta
gtaaattctgcaagaatgcgtcctcctgctgttgaaataggaaaagagaatctttcatcg
gcaagtcagagggaaagcaatacaaattttgtagaagcatcggttccttttgttggaccc
cagaaaggggttatactgaacggaactaaatcattgacttcgccaaaaaagaaactggag
agtttggaacttttggaggaacttcgcagaaagcaggagcttttggctcaaaagcgtgat
gagttccgtcggcaattagttaaatttgaaagacaaacttcaatcaaaaagagtgatgga
tcattggaacaggcagccaaaaaacaaaaaataaaccttggaagccggtcagcgaaagat
gctgaggcagggtcaacaactattagcgtttcaggggagagccagaaagctggaaaatct
ctagaaaggagcaatttgacggagatcgttgtttcaccaagttcaaaaacaaatctagcc
accatgcagcaagctaatcaaattgtaaaacaagtgaatcgaactccagcagcatacgca
agcagatttaagcttgataaccgtcctacttcattcagagttttgcctcctttaccagcc
aaacttgcgaatgtttctgttttgaaggaccatttttcaaaatttggcgatcttgcttat
gttgtttttgaagacccagaggagattgagaattcagacatacaagacccagaaaaaata
gttgtttgtgtaacttttcatacgcgctcttctgctgaaagggcttatcaagctggtaaa
tattgtgaaggttgtagtttgaagttcgcctgggtaactgcctcttctgctgctgggaaa
gattgccatgtggaagaaataccctcaaatgcaattacttttaaagctgaagatgatgac
ataaaaactgagtcaaagtcttcatcttcttcaagtgctggggagcctatttgcataccc
atggctgtttcatcctcattgagtgcaggacagcttacatgcattcctcggtctgaggtt
gatgcaaaaaaaactgaggatcatggcgatgtagaaggcagaaatcgcacttcaagtagt
gtgtccaactccttaatagcaaccttggattccagcccaaccatcccaatgcatgggagc
gaaaatcactaccaataa
DBGET
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