Dendrobium catenatum: 110115419
Help
Entry
110115419 CDS
T05027
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6 isoform X2
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
dct
Dendrobium catenatum
Pathway
dct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110115419
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dct03019
]
110115419
03012 Translation factors [BR:
dct03012
]
110115419
Enzymes [BR:
dct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110115419
Messenger RNA biogenesis [BR:
dct03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110115419
Translation factors [BR:
dct03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110115419
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
R3H
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
nSTAND3
AAA_19
ATPase
Rad17
Ank_5
ResIII
Ank_2
AAA_7
ABC_tran
AAA_22
TsaE
AAA_11
T2SSE
Sigma54_activat
PhoH
AAA_23
Motif
Other DBs
NCBI-GeneID:
110115419
NCBI-ProteinID:
XP_020704293
LinkDB
All DBs
Position
Unknown
AA seq
1216 aa
AA seq
DB search
MTGKRFKKARGKQPENQAFLNESSRVRVGKILEDFRESDGEVYAFEPDLSKQERAAIHEM
CRKMGMISRSSGNGAKRHLSVYKSKKKNQINNKEGELVTSLRFSEEAKAIMQDLFICYPP
DSGELSEKNLQNCSKAVYGAHWKQDTCFLRPSMCKDEIKKKMELHSLRMKDSKFRKVAED
RAKLPIATYMKAITSTLQAHQVVLISGETGCGKTTQVPQFILDHMWSKAESCKVVCTQPR
RISAISVAERISYERGETIGDTVGYKIRFESKGGKNSSIMFCTNGILLRLLIGRGANTSE
MANKKISGRDTLLEITHIIVDEIHERERFCDIMLAIIRDLLPAYPHLRLILMSATFDAER
FSKYFSGCPVIQVPGFTYPVTTYFLEDVLSILRSSDENHLATAALSGVEEVVPLTEEYKT
ALDESIHLALYNDELEPLLEIINAQQNPQTYCYQHSLTGVSPLMVLSGKGRIGDVCMMLS
FGADCSLTDNDGRSAIDWAQQENQFQIYEIIKRHIEKDTSKSAEEEDLLNKYLASINPEN
IDTILIERLLKRICTDSSEGAILVFLPGWADINQTRERLLASGLFKNSSKFMILSLHSMI
PIVEQKKVFKHPPKGVRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYSNVSTFHA
SWISKASAKQREGRAGRCQPGTCYHLYSKVRAAALPDFQVPEIKRMPIEELCLQVKLLDP
NCRVIEFLQKTLDPPVFETIRNAIIVLKDIGALTEDEQLTELGEKLGALPVHPSTSKMLL
FAILMNCLDPALTLACATDYREPFILPMVPDEKKKAAAAKVELASLYGGYSDQLAIVAAF
ECWKNAKNGSQESQFCSKYFVSSSTMNMLLNMRKQLQNELMKAGFIPEDMSSCSLNAQDP
GVLRAVLMAGTYPMVGRFLTPRKNNRRVIVETISGSKVLLHPHSSNFKLSFEKSAVSPII
VYDEITRGDGGLFIKNCSVVSPYPLLLLAVEIAVAPPHDNDDDSEEDSEASSGEEDEMDV
NMSSEQRENQLMSSPDNAVTIVVDRWLKFLSTALDVAQIYCLRERLAEAVLFKVKKPRAV
LPPALGASMHAIACILSYHGHPHILAVDESIDPHEPTLEPSDMSRYNQGRKVSVVTPSSY
LKSLMSDNGRQTFKNFHKFHGPALPTSASASSASNTPLPRIRHNKPSAKAPGHGNPSNPK
KSSFKRRRGSMGSHGG
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgacaggtaaaaggttcaagaaagcgagaggcaagcagcctgagaatcaggcctttctt
aacgaatcctcgcgagttcgagttgggaaaatcctcgaagacttccgcgaatccgatgga
gaagtatacgcatttgaacctgatttatcaaaacaagaacgagcagcaattcacgaaatg
tgcagaaaaatggggatgatatcgagaagctctgggaatggtgccaaacgccatctttca
gtgtacaaaagcaaaaagaagaaccagattaataacaaggaaggagagctggttacctct
ctgcgcttttctgaagaggcaaaagctattatgcaagatctatttatatgctacccccct
gattctggagaattaagtgaaaaaaatttacaaaactgtagcaaagcagtttatggtgca
cattggaagcaagatacttgctttttgaggccttcaatgtgcaaggatgaaattaaaaag
aagatggagcttcattcattaagaatgaaagactcaaaatttagaaaggttgcagaagat
agagctaaacttccgattgcaacctatatgaaggctatcacatcaactttacaagctcac
caggtggtactgatatctggtgagactggttgcggtaaaactactcaggtaccccagttt
attttggatcacatgtggagtaaagctgagtcatgtaaagttgtgtgcacccaaccaaga
cggatctcagcaatttcagttgctgagaggatctcatatgaaaggggagaaactattgga
gacactgttggttataagatacggttcgagtccaaaggtgggaaaaattcttcaataatg
ttctgcacaaatggcattcttttgagattactaatcggcagaggtgcaaatacatcggaa
atggcaaacaagaagatatcagggagggatactcttcttgagataacccacataatagtg
gatgagattcatgagcgtgagaggttttgtgatataatgcttgcaattatcagggatttg
ctgcctgcatatcctcatctacgcttgattctcatgagtgccacatttgatgctgagcgg
ttttcgaaatacttcagtggctgtcctgtcattcaggttccaggattcacataccctgtg
acgacttattttttggaggatgtgctatctattttaagatcatcagatgagaatcaccta
gctactgctgccttaagtggcgtggaggaggttgttccattgacagaagagtacaagacc
gcccttgatgagtcaattcatttggctttatataatgatgaattggaacctttactggag
ataattaatgcccagcaaaacccccaaacttactgttaccaacactcattgacgggagtg
tcaccattgatggtgctttctggcaaaggtagaattggtgatgtttgtatgatgctttcc
tttggtgctgactgctctttgactgataatgatggaaggtcagccatcgattgggctcag
caagaaaatcagttccagatctatgaaatcattaaaagacacattgagaaagatacgtcc
aagtcagctgaagaggaggacctactgaacaagtacctagcaagcatcaatcctgaaaat
attgatactattctaatagagcgtttgttaaaaaggatatgtacagattctagtgaaggg
gctatcttagtctttcttcccggatgggctgatatcaatcaaactagagagaggctactt
gcttcagggctttttaaaaattcctcaaagtttatgatactttctctccattccatgatt
ccaattgtggagcaaaagaaggttttcaagcatcctcctaagggcgtccgtaaaattatt
ctttccacaaatattgctgagactgctataacaattgatgatgttgtttatgttattgat
tctggtcgaatgaaagagaaaagctatgatccttacagcaatgtttctacgttccatgca
tcatggatttcaaaagctagtgctaaacagcgagaggggcgtgctgggcgttgccagcca
ggaacttgttatcatctctattctaaagtccgcgctgctgctttgccagatttccaagtt
ccagaaattaaacgaatgccaattgaagaattgtgtttgcaggttaaacttcttgatcca
aattgtagagtaattgagttccttcagaaaactttggaccctcctgtctttgagactata
cgaaatgcaatcattgtccttaaagatattggagccttgactgaagatgaacagctgaca
gaacttggggaaaaacttggtgctcttccagttcatccatcaacaagcaagatgcttttg
tttgctatcttgatgaattgcctcgatccagctctaactctagcctgtgcaaccgactac
agagagccgtttattcttccaatggtcccggatgagaagaaaaaagcagctgcagctaaa
gttgagctggcttctttgtatggtggttacagtgatcaacttgctattgtagcagccttt
gagtgttggaagaatgcaaagaatggcagtcaagagtcacagttttgctctaagtatttt
gtttcatcaagtaccatgaatatgttactgaacatgcgaaagcagcttcagaatgaactt
atgaaggccggttttattcccgaggatatgtccagctgtagcttaaatgcccaagaccca
ggtgtcttgagggcggtgctcatggctggaacttatcccatggtgggaaggtttctcact
ccgcgaaaaaataacagaagagtaatcgtggagactattagtggttccaaagttttattg
catcctcattcctccaacttcaaattgtcatttgaaaaatctgcggtcagtccaattatt
gtttatgatgagataactcgtggggatgggggtttattcataaagaactgttctgttgtt
tctccttatccgttattattgcttgccgtggagattgctgttgctcctccacatgataat
gatgatgacagtgaggaggattcggaagcatcaagtggagaggaagatgagatggatgtg
aacatgtcatcggagcagcgtgaaaaccaactcatgtcatctcctgataatgctgtcaca
attgttgttgatagatggctaaaatttctatcaacggcccttgatgtcgcccagatttat
tgcttgcgtgagagattagcagaagctgtgctgtttaaagtgaagaaaccacgggcagtt
ctacctcctgcacttggagcatccatgcatgctattgcttgcatcctctcatatcatggg
caccctcacatattggctgtggatgaatccattgatccccatgaaccaacgttggaaccc
tctgacatgagcagatacaatcagggaagaaaggtgagtgtggtcactcccagtagctac
ttgaagtcattgatgtcagataatggcaggcaaaccttcaaaaactttcacaagttccat
ggaccagctctgccaacttctgcttctgcttcctccgcatcgaatactcctttacccagg
attcggcacaataaaccttctgctaaagctccaggtcatggcaatccttcaaatcccaaa
aaaagttcatttaaacgtcgccgaggaagtatgggaagccatggaggttga
DBGET
integrated database retrieval system
