Dendrobium catenatum: 110115540
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Entry
110115540 CDS
T05027
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
dct
Dendrobium catenatum
Pathway
dct03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110115540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dct03041
]
110115540
Enzymes [BR:
dct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110115540
Spliceosome [BR:
dct03041
]
Complex C
Other components
Step II factors
110115540
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
nSTAND_NTPase5
nSTAND3
AAA_30
T2SSE
ABC_tran
SLFN-g3_helicase
ATPase
AAA_29
Motif
Other DBs
NCBI-GeneID:
110115540
NCBI-ProteinID:
XP_020704463
LinkDB
All DBs
Position
Unknown
AA seq
711 aa
AA seq
DB search
MSGGACERRCFPSISRSPLKEQKLVNLNEGSKASNKSLDRKHWILQQRRSLPIASVERRL
VDEVRKNDTIIIVGETGSGKTTQLPQYLFNAGFCRDGKVIGITQPRRVAAVTVAKRVAEE
CDVQLGQKVGYAIRFEDATSTSTRIKYMTDGLLLREALLDPILSRYSVIIVDEAHERTVH
TDVLLGLLKKVQDARLKQHKLDKPYINNVVKFDNECHSSNMKFSPLKLIIMSASLDAKGF
SEYFCGAKAVYVQGRQYPVDILYTYHPEPDYVDATLITIFKIHLDDSPGDILAFLTGQEE
IELVDMLVHERLKQLPELSRNILTVPIYSSLPSEQQMNVFRPTPSNFRKVILATNIAETS
VTIPGVKYVIDPGVVKSRYYNPVTGMESLIIMPISKAQALQRSGRAGREGPGKCFRLYPE
SEFWKLIDSTVPEIKRCSLSNVVLQLKGLGFDDIIGFDFMDKPSRSSIKQSLQELYLLGA
LTDDCKLSDPVGIQMTRFPLDPIYSKALILAGEFKCLEEMLIVVAMLSVESIFYSPREKL
EEARSAWKKFSSPDGDHLTLVTIFRAAVEYREKIRAATNKEKAIDKSLSRWCRDNFINNR
SLKHALDVHSQIKVYLKQMDMALSSCGDDVLQFRRCLTASFFLNAAEKQPDGSYRVKANG
QKVQIHPSSVLFRTKPECIIFTELIQTNQIYVRNISRAWMPELSKYYDVES
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgagcggaggtgcttgtgagcggaggtgcttcccttctatttccagaagtcctctaaaa
gagcaaaaattggttaacttgaacgagggaagtaaggcatcaaataagtctttggatagg
aagcactggattcttcagcaaaggagatctcttcccattgcatcagtggagagaagactt
gtagatgaagtaaggaagaatgatactataataattgttggagaaacaggaagcggaaag
actacacaattgccgcaatatttattcaatgctggattttgtcgtgatggaaaagtcatt
ggcatcacccaaccacgacgagttgctgctgtaactgtggcaaaacgtgttgcagaagaa
tgtgatgttcagttaggtcaaaaggttggttatgcaatcaggtttgaagatgcaacttct
acttcaacaaggattaaatatatgactgatggcttattgttgagagaggcgttattggat
cccatcctttctagatatagcgtcatcatagttgatgaagctcatgaaagaacagttcat
acggatgttctactggggttgttgaaaaaggttcaagatgcaaggttaaaacaacacaag
cttgacaagccatatataaacaatgttgtcaagtttgataacgaatgtcacagctcaaat
atgaaattttctccgttgaagttgattataatgtctgctagcttagatgcaaaaggtttt
tctgagtacttctgtggtgcgaaagcggtttacgtccaagggcgtcagtaccctgtggat
atactctatacataccatccagagcccgattacgttgatgctactcttattactattttt
aagattcatttggatgacagccctggggatatccttgcttttttgactggtcaagaagag
atagaattagtagacatgcttgtccatgagcggcttaaacaattacctgagcttagtagg
aacattctaactgttcccatctactcatcccttccttcggagcagcaaatgaatgtcttt
agaccaactccatccaattttcgcaaggtcatactagcaactaacattgccgaaacttct
gtcactatccctggtgtcaaatatgttatagatcctggagtggtgaaatctcgttattat
aaccctgtgacggggatggagtcattaattattatgccaatctcaaaagctcaagctctt
caaaggagtggtagagctgggcgtgagggtcctggaaaatgcttccggttatatccagaa
agtgaattttggaaacttatagattctactgtccctgagatcaaaaggtgcagcctgtca
aatgttgtactacaactcaaaggccttggttttgatgatattattgggtttgatttcatg
gacaagccttcaaggagttccattaaacaatccctacaggagctgtaccttttaggggct
ttgactgatgattgtaaattatctgatccagttgggattcagatgactaggttccccttg
gatcccatatactctaaagcactcatcttggcgggggaattcaagtgcttggaagaaatg
ttgattgtggttgcaatgctctcagtggagtctattttttactcacctcgtgaaaaacta
gaagaggcaagatctgcgtggaagaagttctcaagtcctgatggtgaccatctaacgctt
gtgactatatttcgtgctgctgtggagtaccgggagaagattagggctgctactaataaa
gagaaagcaattgacaaaagtctaagtaggtggtgcagggataatttcatcaataataga
tcgttaaagcatgcactagatgttcacagtcagataaaagtgtatcttaaacaaatggac
atggctctgtcttcatgtggtgatgatgtgcttcagtttcgcagatgcctcacagcatca
ttcttcctcaatgcagcagagaagcagcctgatggatcatacagggtgaaggcaaatggt
cagaaggtgcagatccacccttcttcagtgctatttagaacaaagcctgagtgcataata
tttactgagttgatccaaactaatcaaatttatgtgcgcaatatttctcgggcatggatg
cctgaactttctaagtattatgatgtagaaagctag
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