Dendrobium catenatum: 110116658
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Entry
110116658 CDS
T05027
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
dct
Dendrobium catenatum
Pathway
dct04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
110116658
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dct04131
]
110116658
Membrane trafficking [BR:
dct04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
110116658
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
VPS8_N
TPR_Vps41
Clathrin
Beta-prop_EML
ANAPC4_WD40
TPR_VPS8_2
WDR55
Beta-prop_RIG_2nd
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40
Beta-prop_HPS5
WD40_WDHD1_1st
WD40_Prp19
zf-RING_Vps41
Beta-prop_IFT140_1st
zf-RING_5
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
110116658
NCBI-ProteinID:
XP_020705989
LinkDB
All DBs
Position
Unknown
AA seq
1939 aa
AA seq
DB search
MELDLDLFLRSRCGDLSSDSSDEGESTATHRRTVDEILNDTDSDSSSSPKALPSIYYALP
NENSTILKEEPRDGDDASQLSAVAETLEEPYNWRRRTGELSSSSYLSSPRDASYSNASKA
SSSRSFPSLFSGVKPKPKPGAALAAAAAASRSIPTPHAAAIKSKRASGESIQKVSLLEDT
TEGLDVEASFVSKALEEPCFSLVASSTGRLGGNEDKRLVESSLPIGSSSLSGFDVATPEL
PQGEVVSCEKERSFFVIDGDTSENLKEDLSCSVSEPQSSVHFESKEGLEDLPSSASTSTD
THVNVLEMNGDLLAVKKGDANAEYEVLVNGAVMEILATESDDFNISDEKISSIGEESMTS
NEIDSLVGQMVNETEGTKNADKKSCAPMKPLDRAEELEKRKASSGLHWEEGAAAQPMRLE
GIRRGPPAIGYLQMDLDNMITRCVSSQTFKHDYGLPHVLAVHMNYIAVGTSKGVVLVFPC
KYSPHSTDNMDGKMLTFGSSGEKIPVAVTSMCFNQQGDLLLVGYSDGHLTIWDVQRGTSA
KVITGEHNAPVTHTLFLEQDSQVSRQFKAVTGDSKGLVLLHTSSLLILHHFSIKTQCLLD
GQKNGTVLCACPIVMDNSQDVASTSAQGYPSVPSGGLGGKVGGVVGGDTGWKLFNGNPSI
VEEGVVVFATNQNALVVRLSPSVEVYENLSKPDGVLEGSMPYAAWKCIGHSHDASIDASD
KVAWLAIAWDKKIQIARLAKSKMRKHKEWILDSTTIGVAWLDDQMLVVLTIRGQLCLFSR
DGAEIHRTNLTVDCSSMDDFIMYHTHYMNTFGNPEKAYHNSVAVRGATIYILGPMHLIIS
RLLPWKERIQVLQKAGDWMGALDMAMRLYDGHALGVIDLPRTVNAIREAIMPYLVELILL
YVDEVFSYISIAFYNQIDKVSLKEDPSITDSSVRSEIAEQYARVGGVAVEFCVHIKRTNL
LFDGIFSKFVAVQHEGTFLEILEPYILRDMLGCLPPEIMQALVEHYSSKGWLERVEQCVL
HMDISSLDFNQVVRLCREHGLYGALIYLFNRGLDDFKAPLEELLLVVQNNSNLDDASIGY
RMLVYLKYCFQGLAFPPGHGYLPPSRLPSVRKELLEFLLEDSKISTSQVSKKLKSSCGNL
SNLLCILSLDTEAALDVLKCAFNEPETINDPSVLDLAASHENLENQHELKYSKTQDAVVQ
SIANALISILDLESDLVSFFEMDDNSDAWPLKKDIHFILEFIGYLVATKNAKISTRVLMH
ILEYLTSSSLTLLDYSEKNNALLKERQALSVLKAVPQEIWNSSFVLPLCVEAKFFQACGL
IHYIRGEYVAALDSYMQDLDEPIHAFSFINKLFLQLDNAEALLFQSAVISRIPELVKLSR
ECTFFLVIDQLDSEKQHILSQLHSHPLSLFLFLKTVIDFHISGTLNFPVPETIISNNPNV
RTRDSSIEIADYVEKLSNFPKLLHHDAIQVTDEMAEQYLELLCQFERGSVLKFLETFDNY
RLEHCLKLCQEYGVTDAAAFLLERVGDVGNALLLIMSGFDEKIELLVSAVINKFSDVNSR
NISQTEQLVDILKLKEALAVHDVLRASVGLCQRNTHRLDQQESESLWFRLFDSFSEPLRR
FCSVNEAPERKKDNNKMIAGSQIFVGIDESLSGHKPSEFKKCGNILRRLFSQFIGEIMEG
MAGYLPVPAVISKLLSENRNQEFGDFKMTILKMLGTYNYERRILDTAKSLIEDDTFYTMG
VLKKGASHAFAPQNLNCCFCGLPLTKGSSSSGIRVFNCGHAIHLHCESGENEPHKMHSAV
ACPVCQLRKNPRARSRSATNDNGLVSNYISTSQHSRGNSSLQHLHETDLIDKSYGLQQIS
RFDILNNLQKNKSLHIDILPQLRLAPPAIYHEKIQKGPVSLTREMLNTAPKEKSHKSKGS
LSRFPLKSSIFGTEKSKVH
NT seq
5820 nt
NT seq
+upstream
nt +downstream
nt
atggagctcgacctcgatttgtttctacgatcgcgctgtggagatctctcttcagacagt
agcgacgagggcgagtcaactgccacccatcgccgcaccgtggacgaaatccttaacgat
accgattcggattcctcttcctccccaaaagctctaccttccatttattatgctctcccc
aacgagaattccacaatccttaaggaggaaccaagagatggagacgatgccagtcaactg
tcggcggttgcggaaaccctagaagaaccctacaattggaggagaagaactggggaacta
tcatcatcttcatacctttcttctccgagggatgcgagctactccaatgcttccaaagct
tcttcctcccgatcttttccgtcactattcagtggcgtgaagccgaagcctaagcctggc
gcagcactcgcggctgctgcagctgcatcccggtccattcctactcctcatgcagcggcg
atcaagtctaaaagggcaagcggtgaatccatccaaaaggtttcactgcttgaagacacg
acagaaggtcttgatgtggaggcgagctttgtctcgaaagctttggaagaaccttgtttt
tcgttggttgcctcatcaactgggagattgggaggtaatgaggacaaaagattagtagaa
tcttccttacctattggatcttcttctttatcaggctttgatgttgcaacgcctgaactg
ccccagggagaagtggtgtcttgcgagaaagagcgatctttttttgttattgatggagat
acctctgagaatctaaaagaggatttgtcctgctctgttagtgagccacaatcttctgtg
cattttgaatctaaggaaggtctcgaggacctgccttcctctgcttcaacttcaactgac
actcatgtgaatgtccttgagatgaatggtgatttactagctgtaaagaagggtgatgcc
aatgctgaatatgaagttcttgttaatggggcggtcatggaaattttagcaactgaatct
gatgattttaatattagtgatgaaaaaattagtagcattggagaagagagcatgacttca
aatgaaatagatagtctggttggccagatggtgaatgagacggaaggcacaaagaatgcg
gataagaaatcatgtgcacctatgaagccattagaccgggctgaagagctcgagaagaga
aaggcttcatccggtttgcattgggaagagggggcagctgctcagccaatgaggcttgaa
ggcattcgcagaggcccacctgctattggttatctacaaatggacctggacaacatgatt
actcgttgtgtttcttcacaaacgttcaagcatgactatggtttaccacatgtcttagct
gtgcatatgaattatatagcagtgggcacatcaaaaggggttgttcttgtctttccctgc
aaatattcccctcactccactgataacatggatggaaagatgctgacatttggttcatct
ggtgagaaaattccagtagccgtgacttccatgtgtttcaatcaacagggtgacctactg
ctagttgggtacagtgatggtcatctaactatatgggatgtacagagagggacttcagca
aaagttatcaccggggagcataatgcaccggtaacacatactttgtttttggagcaagat
tcacaagtttcacgccaattcaaagctgttacaggcgattccaagggtcttgttctgctc
cacacttcttctttgctcattcttcaccatttctccattaagactcagtgccttctagat
ggtcaaaaaaatggtactgttttgtgtgcatgccctattgtgatggataattctcaagat
gttgctagcacatctgctcaaggctatccctcggtcccttccggtggtctaggtggtaag
gttggcggtgtagttggaggtgacactggatggaagctattcaatgggaacccctccata
gttgaagaaggtgtggtcgtttttgctactaaccaaaatgctctagtggtaaggcttagt
ccttctgtggaagtttatgaaaacctttccaaaccagatggagtgctagaaggttccatg
ccttatgcagcatggaaatgtataggccattctcacgatgcttctatagatgcatcagat
aaagttgcatggcttgcaatagcttgggataagaaaatccagatagccaggttggctaaa
tcaaagatgagaaagcacaaagagtggatcctggatagcacaacaataggtgttgcatgg
ttggatgatcagatgttagtggttcttactatcagaggacaactctgcttgttttcaagg
gatggagcagagattcatcgtacaaatcttaccgtagattgctctagcatggatgatttc
attatgtatcatacccactatatgaatacctttggaaatccagagaaagcttaccataat
tcagtagcagtaagaggggctacaatctacatacttggacccatgcatcttataatttct
cgtcttctcccatggaaggaacgaattcaggttcttcaaaaggctggtgactggatgggt
gcattagacatggcaatgagactttatgatggccatgcactcggagtaatagatctccct
agaacagtcaatgctatccgggaggccataatgccttacctagttgaattgatcttgttg
tatgttgatgaagtgttctcttatatttccatagccttttacaaccaaatagataaagtt
agcttaaaagaagaccctagcattactgacagttctgtgcgctcggagatagcggagcag
tatgctcgtgttggcggggtcgcagtagagttttgtgttcacataaaaaggactaacctt
ttgtttgatggaatattctcaaaatttgttgctgttcaacatgaaggcacttttttagag
attttagagccatatatattaagggatatgctaggatgtttgcctcctgagatcatgcaa
gcgttggtagagcattatagtagcaaagggtggttagagcgagttgaacagtgtgttctt
cacatggacatttcttccttggattttaatcaggttgtgaggttatgccgggaacatgga
ttgtatggtgcactgatttatcttttcaatagaggcctagatgattttaaggcacctctt
gaggagctcttgttggttgtgcagaataattcgaatttggatgatgcttctatcgggtac
agaatgcttgtttatctgaagtattgctttcaaggccttgcatttcctccaggacatggt
tatcttcctccctctagattaccttcagttagaaaagaattgctggagttcttacttgaa
gattctaaaatttcaacctcacaagtgtcaaaaaagctcaaatcatcttgtggaaattta
tcaaacctcttatgtatcctttccttggatactgaagcagctttggatgttcttaagtgt
gctttcaacgaaccagagactattaatgatccatcagtgcttgacctagcagcttctcat
gaaaatctagaaaatcagcatgaactcaagtattcaaaaacccaagatgcagtggtgcaa
agtattgcaaatgcactaatatctattcttgacttggaatctgacttggtctcgttcttt
gagatggatgacaattcagatgcttggcctttgaaaaaagatattcattttatactagaa
ttcatagggtatcttgttgcaactaaaaatgccaaaatttctacaagagttttgatgcat
attcttgaatatttgacatcatcaagtttaacactacttgattacagtgaaaaaaataat
gctcttctaaaggagaggcaagcgctttctgttttgaaggcagtgcctcaggaaatttgg
aattcttcttttgttttgcctctctgcgtggaggctaaattctttcaggcatgtggcttg
attcattacatcagaggcgagtatgttgctgccttagatagctatatgcaggatttggat
gagcctattcatgcattttcttttataaacaagttgtttttgcaactagacaatgcggag
gctttattatttcaatcagcagttatttcacggattcctgagctggttaaacttagcagg
gaatgcacatttttcttggttattgaccaacttgatagtgagaagcagcatattctttca
cagcttcattctcatccacttagccttttccttttcttgaagactgtaattgattttcac
atatctggcactctcaactttcctgtgcctgaaactattatatcaaataatcctaatgtt
agaacgagggattcatctattgaaattgcagattacgtggagaaactctcaaattttcca
aagcttttgcatcacgatgcaattcaagtaactgatgagatggcagagcagtatttagag
cttttgtgccagtttgaacgtggttctgtcctaaagtttttggagacttttgataattat
agactggagcactgtttgaaactctgtcaagagtatggtgttacagatgcagctgctttt
ttgctcgaaagagttggtgatgttgggaatgctttgctacttataatgtctggctttgat
gaaaaaattgaattgcttgtttctgcggttatcaataaattttctgacgtaaattcaaga
aatatctctcagacagagcaacttgttgatatcttgaaacttaaagaggctctggctgtt
catgatgttttacgtgcctcggttggcttatgccaaagaaacactcatcgtttggatcaa
caagagtccgagtctctttggtttcggttatttgactcgttctctgagccactaaggaga
ttctgcagtgtcaatgaagctcctgaacggaaaaaagataacaacaaaatgattgctggt
tctcaaatattcgtgggcattgatgaatccttgtctggacacaagccttcagagtttaag
aaatgtggtaatattttgaggagactattttctcaatttattggagaaatcatggaggga
atggcaggatatttacccgtccctgcagttatatccaagctcctttcagaaaatagaaat
caagagtttggtgattttaaaatgactattctaaaaatgctgggaacttacaattatgag
agaagaatactggatacagccaaatcattaatagaagatgacacgttctacaccatgggt
gttctaaagaagggtgcttcgcacgcttttgcaccgcaaaatttaaactgctgtttctgt
ggtttaccccttaccaaggggtcatcttcatcaggtattcgagtatttaactgtggacat
gcgatccatctccactgtgaatctggagaaaatgaaccccataaaatgcattctgctgtt
gcctgcccggtctgtcagcttaggaagaatccaagggcaagaagcagatcagctaccaat
gataatggattagttagtaattatatctctacctcacagcactcgcgaggaaactctagc
ctgcaacatctgcatgaaactgatttgatagataagtcctatggcctccagcaaatttct
aggtttgacatcttgaataatctccagaaaaacaagtctctccatattgatattttacct
cagttgaggctcgcgcctccagctatttaccatgaaaaaatccagaaagggcctgtttct
ttgacaagggagatgcttaatacagcaccaaaggaaaaatcacataaatcgaagggttca
ctaagccgatttcctttaaaatcaagcatctttggaactgaaaaaagtaaagttcattaa
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integrated database retrieval system
