Musicola paradisiaca: Dd703_0788
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Entry
Dd703_0788 CDS
T00927
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
dda
Musicola paradisiaca
Pathway
dda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dd703_0788
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dda03019
]
Dd703_0788
03016 Transfer RNA biogenesis [BR:
dda03016
]
Dd703_0788
Enzymes [BR:
dda01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Dd703_0788
Messenger RNA biogenesis [BR:
dda03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Dd703_0788
Transfer RNA biogenesis [BR:
dda03016
]
Prokaryotic type
tRNA degradation factors
Dd703_0788
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
WHD_RNase_R
S1
TFIIE_beta
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
ACS84599
UniProt:
C6CAC4
LinkDB
All DBs
Position
897101..899560
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AA seq
819 aa
AA seq
DB search
MSQDPFLEREAEKYESPIPSREFILEHLRKRDTPISRDELATDLALSSDEQLEALRRRLR
AMERDGQLVFTRRQCYALPEKLDLVRGAVIGHRDGYGFLRVDGRKDDLYLSADQMKLAIH
GDVVLAQPLGEDRRGRREARIVRVLEPRTSQIVGRYFTEVGSGFVVPDDSRLSFDILIPP
ESICGARMGSVVVVELIQRANRRTKAIGKIVEVLGDNMGTGLAVDIALRTHEIPHTWSQQ
VQNQVADLTEEVPESAKKGRVDLRTLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPGTALDHEARARGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS
TQGKLSGFKFYEAVMSSHARLTYTKVWHILQGDEALRGQYQVLVEPLEELHRMYKVLDHA
REERGGIAFETEEAKFIFNAERRIERVEASVRNDAHKLIEECMILANIAAARFVEKNSEP
ALFRVHDRPSEDHVMALRSVLAELGLTLKGGMKPQPKDYAELMDEVAERPDHEMLQTMML
RSMKQAIYDPENRGHFGLALTSYAHFTSPIRRYPDLSLHRAIKYLLGNRQERWTPSGGWH
SDFTEMLQLGQHCSMTERRADEATRDVADWLKCDFMQDHVGEVFTGIISSVTGFGFFVRL
NDLFIDGLVHVSTLDNDYYRYDNVGQRLIGESRGQTYRLGDEVQIRVDAVHMDERNIDFT
LVSTTRRVRGEGKTERDRAKKGAAAERKPARRQAGKRVNFEPDSAFRAEGAGKRKKAAEA
KPGGKKQASRTKKNAEKTRKIAAATRAKRAGKKKTAAEE
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatccattcctggaacgcgaagcagaaaaatatgaatctcccatccccagc
cgcgaatttattctggaacacctgagaaaaagggatacgcccatcagccgcgatgagctg
gccactgatttggcgctctcctccgatgaacagctggaagcgttgcgtcgccgcttgcgg
gcgatggagcgtgacggacaactggtctttacccgtcgccaatgctatgcgctgccggaa
aaactggatctggtgcgcggcgcggtgatcggtcatcgcgatggttacgggttcctgcgc
gtggacggccgtaaggatgacctctacctgtcggcggatcagatgaagctggcaatccat
ggcgacgtggtgctggcgcaaccgttgggcgaggatcgtcgtggccgccgtgaagcgcgc
atcgtgcgggtgttggaaccgcgcaccagccagatcgtcgggcgttatttcacggaagtc
ggatccggtttcgtggtgccggacgatagccggctcagtttcgatattttgatcccgccg
gagtctatctgcggcgcgcgcatgggttccgtggtggtggttgagctgatccaacgggct
aaccgtcgcaccaaagccatcggcaaaattgtggaagtgctgggcgacaatatgggcacc
ggcctggcggtggatatcgcgctgcgtacccatgaaattccgcatacctggtcgcagcag
gtgcagaatcaggtggctgatttgacggaagaggtgccggaaagcgccaaaaaagggcgc
gtggatttgcgcacactgccgctggtgactatcgacggcgaagacgctcgcgattttgac
gacgcggtctattgcgagaaaaaacgcggcggggggtggcggctttgggtggcgatcgcc
gacgtcagctactatgtccggcccggcaccgcgttggatcacgaggcgcgggcgcgcggc
acctcggtctatttcccatctcaggtagtgccgatgctgccggaagtgctgtccaacggg
ctgtgttcgctgaacccgcaggtcgaccgcctgtgtatggtgtgcgaaatgacggtgtcc
acgcaggggaaactctccggtttcaaattctatgaagcggtgatgagttcccatgcccgg
ctgacttacaccaaagtgtggcacatcctgcagggcgacgaggcgctgcgcgggcaatat
caggtgctggtggaaccgctggaggaattgcaccggatgtacaaggtgctggatcacgcc
cgtgaagaacgtggcggcatcgccttcgaaaccgaagaagccaaattcattttcaacgcc
gaacgccgtatcgaacgggtggaagcgtcggtacgcaatgacgcccacaagttgattgaa
gagtgcatgattttggcgaatatcgcggcggccaggtttgtagagaagaatagcgagccc
gcgctctttcgcgtgcatgatcgccccagcgaggatcatgtcatggcactgcgcagcgtg
ctggcggaactgggattgacgctgaaaggcggtatgaagccgcagccgaaggattacgcc
gagctgatggacgaggtggcggagcgtcccgatcacgagatgctgcaaaccatgatgctg
cgctccatgaaacaggcgatctacgacccggaaaatcgcggccatttcggattggcgttg
acctcttatgcgcatttcacctcgccgattcgccgttaccctgatctttcgttgcatcgc
gccattaaatatctgctcggcaatcggcaggagcggtggacgccgagtggcggctggcac
agcgatttcactgaaatgctgcaattggggcagcactgttccatgaccgagcgccgggcg
gatgaagccactcgcgatgtggcggattggctgaaatgcgactttatgcaggatcatgtc
ggggaagtctttaccgggattatttccagcgtgaccggctttgggttctttgtgcggtta
aacgatctgttcatcgacggtctggttcacgtttccacactggataacgactactatcgt
tatgataatgtcggccagcgcttgatcggcgagtctcgcggccagacgtatcggctgggc
gacgaggtgcaaatccgcgtcgatgcggtacatatggatgagcgcaatatcgacttcacg
ctggtatccaccacccgtcgggtgcggggggaaggcaagaccgaacgcgatcgggcgaag
aaaggcgctgccgccgagagaaagcccgcacgccgtcaggccggcaagcgcgtgaatttc
gagccggacagtgcgtttcgcgccgaaggcgcaggcaagcgtaaaaaagccgccgaggcc
aagccgggaggcaagaagcaagcgtcgcgcacgaaaaaaaacgcagagaaaacccgtaaa
atcgctgcggcaacgcgcgccaaacgggccggcaagaaaaaaacggcggcagaagagtaa
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