Musicola paradisiaca: Dd703_1579
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Entry
Dd703_1579 CDS
T00927
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dda
Musicola paradisiaca
Pathway
dda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dd703_1579
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dda03019
]
Dd703_1579
03009 Ribosome biogenesis [BR:
dda03009
]
Dd703_1579
Enzymes [BR:
dda01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Dd703_1579
Messenger RNA biogenesis [BR:
dda03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Dd703_1579
Ribosome biogenesis [BR:
dda03009
]
Prokaryotic type
rRNA processing factors
Dd703_1579
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
ACS85378
UniProt:
C6C3N3
LinkDB
All DBs
Position
complement(1865765..1868947)
Genome browser
AA seq
1060 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPNNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSALQLPDGMGLIVRTAGVGKSADAL
QWDLAFRLKHWEAIKKAAEGRSAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELA
KEHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLREAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRDAVNAIEKRQGGVRAIIVPHDGME
TPHYSVLRIRKGEEKQALSYMLPQLLESETQQTSDEPAPERKMPEQPALASFTIPDIPPV
ESQQPVQETSNSTTSTGTERPGILGRMIGALKNLFGGAAEADVKPEEIAAVHTEEEQKQE
RRNGRRQSNRRDRGQRDNREPRERDEQRRAKRAQQAAAPEPTETVIEDVQDKTPDRDARD
EQRREQRVERQRRRQEDKRQAQQEIKDLNGSVTEIDDETSADQEKPAPVMVRRQRRQLSQ
KIRINNTDERTESDSVTPVSSDAGTALPLLEAPVTLVPVADTAEAAEIDVNTETPRENGL
PRRSRRSPRHLRVSGQRRRRYRDERYPIVSPMPLVQASASPEMASGKVWVHYPVVQPVVA
EVFEQNNGDADIIQEVTEQASIISTPVEIPAAFQHEESAVAEATTQPVEPATVSMELTIP
SQNDAELQPIVEPQPIVEPSIVEPSIATADVDVLEPTEEAVAVMPSPVATDEKIAPVTHH
IATASEQDTQAEMQTEVQSVVASAEETAGNVVPTISSDEPLRHPRHATAPMTKAPAPAYI
PDAPHISDWQRPAYQFSGKGAAGGHSAVNQSSAPATQPEE
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcaactcagcaagaagagttgcgtgttgctttggttgat
ggtcaacggctttacgatctggatatcgaaagtccaggacatgagcaaaaaaaagcgaat
atttacaaaggtaaaattacgcgcatcgaacccagtctggaagcggccttcgttgattat
ggcgctgaacgacacggtttccttcctcttaaagaaatcgctcgcgaatattttcccaac
aattactcatcccatggccgccctaacatcaaagatgttttgcgtgaaggccaggaagtg
attgttcaggtagataaggaagaacgcggcaacaaaggggcagcactaaccacatttatc
agccttgcgggcagttatctggttcttatgccaaacaaccccagagccggcggcatttcc
cgccgcatcgaaggtgatgaccgtaccgagctgaaagaagcgctgagcgcattgcagttg
cctgacggtatggggttgatcgtcagaaccgccggcgtcggcaaatcggctgatgcgttg
cagtgggatctggcattccgtctcaaacactgggaggccatcaagaaagcggctgaaggg
cgctcggcgccattcctgattcatcaggagagcaatgttattgttcgcgctttccgtgat
tatctgcgcccggatatcggcgaaattcttatcgataaccccaaagttctggaactggcc
aaggagcatattgcggcgttgggccgtcctgacttcagcagcaaaatcaaactgtacacc
ggcgagatcccgttgttcagccattatcaaatcgaatctcaaattgagtccgctttccag
cgcgaagtgcgtctgccttccggcggttcaattgttatcgacaccaccgaagcgctgacc
gctatcgatatcaactcggcacgcgcaacccgtggcggtgatatcgaagagacggcattt
aataccaacctggaagccgccgacgaaattgcacgccaactccgtctgcgtgatttgggt
ggattgatcgtcatcgactttattgatatgaccccggttcgtcatcagcgcgaggtggaa
aaccgcctgcgggaagctgtccgccaggatcgcgcccgcatccagatcggcaggatttcc
cgttttggtctgctggagatgtctcgtcagcgcctgagtccgtcgctgggtgagtccagc
catcacgtctgtccgcgttgtagcggcaccggcacgattcgcgacaatgaatcgctgtcg
ctgtctatcctgcgactgattgaagaagaggcgctgaaagaaaatacgcaagaagtgcat
gccatcgtgccagtacctatcgcgtcctacttgctgaatgaaaaacgcgatgcggttaat
gcgattgaaaaacgtcaaggcggcgttcgcgcaatcatcgtgccgcacgatggcatggaa
accccgcattattctgttcttcgcatccgtaaaggcgaagaaaaacaggcgttgagttat
atgttgccgcaattgctggagtcggaaacacagcaaaccagcgatgaacctgcgccagag
aggaagatgccggaacaacccgcactggcatcattcaccattccagatattcctcctgtt
gaatctcagcagccggtacaggaaacgtcgaacagcacgaccagcactggcaccgaacgc
ccaggcatactgggccgtatgataggcgcattgaaaaatctgtttggcggcgcagccgaa
gcggatgtgaagccagaagaaatcgcagcagtccatacggaagaagagcagaaacaggaa
cgacgaaatgggcgccgtcaatcaaatcgcagagatcgcgggcaacgggataatcgcgaa
ccacgtgagcgcgacgagcagcgccgggctaagcgcgcgcagcaggctgctgcgccagaa
cccacagagactgtcattgaagacgttcaggataaaacacctgaccgcgacgcccgagac
gagcagcgtcgagaacaacgtgtggagcgtcagcgccgtcgtcaggaagacaaacgtcag
gctcagcaggaaatcaaggatctgaatggcagcgtgaccgaaatcgatgatgaaacatcc
gccgatcaggaaaaacccgcgccagtgatggttcggcgccagcgtcgtcagttaagtcag
aagattcgcattaacaatactgacgaacgcactgaaagcgacagcgtcactcctgtttct
tccgatgccggaactgcactgccattgctggaagctcctgttacccttgtaccggttgcc
gatactgcggaagcggctgaaattgatgtaaatacagagacgcctcgtgaaaacggcttg
ccgcgtcgttcccgtcgttctccccgtcatttgcgggtgagcggccaacgtcgtcgccgc
tatcgtgatgaacgctatcctatcgtgtcgcctatgccgttggtacaggcatccgcctcg
ccggaaatggcatctggtaaggtgtgggttcattatccggtggttcagcctgtggtggca
gaggtcttcgaacagaataatggtgatgcggacatcattcaggaagtgactgaacaggct
agtattatctcgacccctgtcgaaatacccgctgcgtttcaacatgaagaaagcgccgta
gcggaagccacaacacagccagtagagccagcaaccgtttccatggaattaaccattccg
tcacagaacgatgctgaactgcagccgattgttgaaccacagccgattgttgaaccgtcg
attgttgaaccgtcgattgctaccgccgatgtcgatgttctggaacccacggaagaagcg
gttgccgtgatgccatcgcccgtcgcgactgacgagaaaatcgcaccggtaacgcatcat
atcgccaccgcttccgagcaggatactcaggccgaaatgcaaaccgaggttcagagtgtt
gtcgcatcggccgaagaaactgcaggtaacgttgtgccgacgattagcagtgacgaaccg
ctgcgccacccgcgacacgcgacagcgccaatgacgaaagcccctgcaccggcttatatt
ccggatgcaccgcacatcagcgactggcaacgtccggcttatcagttctctggcaaaggc
gctgcgggcgggcattctgcagtcaatcagtccagcgcgccggccacccaaccggaagag
taa
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