Musicola paradisiaca: Dd703_3007
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Entry
Dd703_3007 CDS
T00927
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
dda
Musicola paradisiaca
Pathway
dda03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dda00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Dd703_3007
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dda03400
]
Dd703_3007
Enzymes [BR:
dda01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Dd703_3007
DNA repair and recombination proteins [BR:
dda03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Dd703_3007
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_25
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ACS86782
UniProt:
C6CC22
LinkDB
All DBs
Position
complement(3498653..3502222)
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AA seq
1189 aa
AA seq
DB search
MNERRSESLNLLTLPLLGERLIEASAGTGKTYTLAGLYLRLLLGLGGENAYPRPLSVEEI
LVVTFTEAATQELRDRIRDKIHSLYLACLRNESDEPLVKLLLAEIPDAFRAEAAQVLLRA
ERQMDEAAVHTIHGFCQRMLATNAFESGVLFEQRLVEDETPLYRQACADFWRRFCYPLPL
SVASELGREWAGPDALLQDLMPYLHGEMPLLRRPPDPDETLLARHQNIIARLETFKAAWL
GVAKELEALIGSSGVDKRRYSSRYLPLWLSNVTAWAQQPTRNYQLPKELERFGQRELNQR
TIKGEPPQHAIFLAVDDLLQSSLTLRDLAISLALSEVRLSIREEKQRRAELGFDDLLSRL
DEALQQDAGQALAQAIRERYPLAMIDEFQDTDAQQYRIFSTIYADQPQCGWLMIGDPKQA
IYAFRGADIFTYMRAREDVPSHYTLDTNWRSTPGMVEAVNRLFQCADTPFVFSQIPFLPV
NAADNNRSLTFEYQGSRMPAMRFWLTGREGVGVGDYQQAMARQCADSICSWLSAGQRGEA
WLTRGEMRRPVVASDITVLVRSRYEAALIRQALGRLNIPSVYLSNRDSVFAASEATELLW
LLQAVLAPEQERLLRGAMATSLMGMDAAALDELCRNESQWDALVDEFAGYRHIWGQRGVL
PMLRRLMQQHRLAENLLASPEGERRLTDVLHIGELLQEASAALDSEHALVRWLAQQIAQP
NSQSESQQLRLESDRHLVQIVTIHKSKGLEYALVWLPFICNFRAQPQGIYHDRQTLLPTL
DLNGGEESRTLAEEERLAEDLRLLYVALTRSIYHCAVGVAPLYLRSQKKEGNSDMHSSAL
GYLLQRGAAAPADVLVAALEAMAGDDIDIADVVAEDGEPWRPALETAPLLQVRQNKRQLH
DRWRVTSYSGLQQHGASAIQELFPRLDLETKGEEAQAPDEAFTPHTFPRGAAPGTFLHSL
FEQLEFTAAIDEPWLLEQLRQQGMAEEWQPVVKAWLATVLDTPLTPEHIRLSALESRFRQ
SELQFYLPIASMLDAGKLDRLAKTHDPLSADCPALDFQQVKGMLKGFIDLVFFWQGRYYL
LDYKSNWLGPDAGAYTQPAMHRAMAEHRYDLQYQLYSLALHRYLRHRVPGYDYQRHFGGV
IYLFLRGISAAYPGHGVFFTKPAQLLVDGLDLLFQGDTTIMDDEGAGNA
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaacgtcggtcagaatcgttaaacctgctgacgctaccgttgctgggcgaacgg
ctgatagaggcgtcggcgggaacagggaaaacctatacccttgccggtctttatctccgg
ctattgctggggctggggggagaaaacgcttatccgcggcctttatcggtggaagagatt
ctggttgtgacgtttaccgaagccgcgacgcaggaactgcgggatcgtatccgggataag
attcacagtttgtatctcgcctgtttgcgcaatgaaagtgatgaaccgctggtcaagttg
ttattggcggaaattccggatgcgtttcgtgctgaggcggctcaggttttgctacgggcg
gaacggcagatggacgaagcggctgtccacaccattcatgggttttgccagcgtatgctg
gcgaccaacgcttttgaatccggggttttgttcgagcaacggttggtggaggatgaaacg
ccgctttaccgtcaggcatgcgcggatttctggcgtcgattctgctatccgttgccgtta
tcggtggccagcgagttggggcgtgaatgggcggggccggatgcgttgttgcaggacttg
atgccttatttacatggcgagatgccgttattgcgtcggccccctgacccggatgaaacc
ctgctggcgcggcatcagaatattattgccagactggagacgttcaaggccgcctggctg
ggcgtggcgaaagaactggaggcgctgatcgggagttccggcgtcgacaagcggcgttac
agcagccgctatctgccgttgtggctgagcaatgtgacggcatgggcgcagcagccgacg
cgcaattatcagctacccaaagagctggagcgttttggacagcgggaactgaatcagcga
accatcaagggcgagccgccgcaacacgctatcttcctggctgtggatgacctgctgcag
tcatcgctgacgctacgcgatctggcgatcagtctggcattgtccgaggtgcgattgtcg
atccgtgaggaaaaacagcgccgcgccgaattgggatttgatgatttgttatcccgattg
gatgaggcgttgcagcaggacgccggccaggcgttggcgcaagcgatccgtgagcgttat
ccgctggcgatgatcgatgaatttcaagacaccgatgcccaacaataccggattttcagt
accatttatgccgaccagccacagtgcggctggctgatgatcggtgatcccaaacaggcg
atctatgcttttcgcggcgcggatatcttcacttatatgcgtgccagggaagatgtgccg
tcgcactatacgctcgatactaactggcgttcgacgcctgggatggtcgaagcggtcaac
cgcctgtttcaatgtgccgacacaccgtttgtgttttcgcagatcccgtttttgccggtc
aatgccgccgataacaaccgctcgctaacgtttgaataccagggtagtcgcatgccggcg
atgcgattctggctaactggccgggagggcgtgggcgttggcgattaccaacaggcgatg
gcgcgccagtgcgccgacagtatctgtagttggctcagcgccgggcagcgcggcgaggct
tggttaactcgtggcgaaatgcgtcggccggtggtcgcatcggatatcacggtgttggtg
cgcagccgctatgaagcggcgcttatccgccaggcgctgggacggctgaatattccttcg
gtgtatctttctaatcgcgatagcgtatttgccgcgtctgaggccactgaattgttgtgg
ctgttgcaggcggtgctggcgccggagcaggagcggttgctgcgcggtgcgatggcgacc
agcctgatgggaatggatgctgcggcgctggatgaactatgccgcaatgaatcgcagtgg
gatgcgttggtcgatgagttcgccgggtatcggcatatttgggggcagcgcggtgttttg
cccatgctaagacggttgatgcagcagcatcggctggcggaaaacctgctggccagccca
gagggcgaacgacgattgacggatgttttgcacattggcgaactattgcaggaagcctcc
gccgcgctggatagcgagcacgcgctggtgcgctggctggcgcaacagattgcccaacct
aatagtcagtcggaaagccaacaattgagactggaaagcgatcgtcatctggtgcagatc
gtgacgatccacaagtcaaaggggttggaatatgcgctggtgtggttgccgtttatttgc
aatttcagggcgcagccacaggggatttaccacgatcgccagaccttgctgccgacattg
gatctcaatggcggtgaggagagccgcacgttggcggaagaagagcgtttggcggaagat
ctgcgcttgctttatgtcgcgctgacccgctccatttaccactgtgccgtgggggtggct
ccgctctacttacgctcgcagaagaaagagggaaacagcgatatgcattcgagtgcgctg
ggttatctcttgcaacggggggccgcagcgccagccgatgtgttggtggcggcgctggaa
gcgatggccggggatgacatcgatatcgccgatgtggtggctgaagacggggagccctgg
cgcccagcgttggaaaccgcgcctttactgcaggtgcgtcagaataagcggcaattgcac
gatcgctggcgcgtcaccagttattccgggttacagcagcacggcgcatcggcgatacag
gaactgtttccccgattggatcttgaaacgaagggcgaggaggcgcaggcgccggatgag
gcattcacgccgcatacctttccgcgtggagcagcgcccggcacttttctacacagtctg
tttgaacaactggagtttaccgctgccattgatgagccatggctgttggagcaacttcgg
cagcaaggtatggcggaggagtggcaacctgttgtgaaggcgtggttggcaaccgtgctg
gatacgccgctgacgccggagcatatccggctgtcggcactggaaagccgtttccgtcag
tccgaactgcaattctacctgccgatagcctcgatgctggatgccggtaagttggatcga
ctggcgaaaactcacgatccgttgtcggctgattgccctgcactcgattttcagcaggtg
aaaggcatgctgaaaggttttatcgatctggtctttttctggcaggggcgttattacctg
ctggattacaaatctaactggctggggccggatgcgggcgcttacacgcagccggctatg
caccgggcgatggccgagcatcgttatgatctgcaataccagctttattcgttggcattg
caccgttatctccgccatcgtgttcctggttatgactatcagcgccattttggcggtgtt
atctatttgtttttacgtggaatcagcgcagcgtatccgggacatggcgtgttttttacc
aaaccggcgcagctactggtggatgggctggatctgctgtttcagggcgatacgacgata
atggacgacgagggtgccggtaatgcttga
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