Musicola paradisiaca: Dd703_3340
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Entry
Dd703_3340 CDS
T00927
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dda
Musicola paradisiaca
Pathway
dda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dd703_3340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dda03019
]
Dd703_3340
03009 Ribosome biogenesis [BR:
dda03009
]
Dd703_3340
Enzymes [BR:
dda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Dd703_3340
Messenger RNA biogenesis [BR:
dda03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Dd703_3340
Ribosome biogenesis [BR:
dda03009
]
Prokaryotic type
rRNA helicases
Dd703_3340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
DeaD_C
Cas3-like_C_2
AAA_30
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACS87102
UniProt:
C6CE08
LinkDB
All DBs
Position
complement(3910230..3912095)
Genome browser
AA seq
621 aa
AA seq
DB search
MAEFETSFADLGLSAPILNALSDMGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
SLPLLNNVNPELKAPQILVLAPTRELAVQVAEACGEFSKHMHGVNVVALYGGQRYDVQLR
ALRQGPQVVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPDG
HQTALFSATMPEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALIRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVDRISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNV
ERTMKLTIPEVELPNAELLGQRRLAKFAAKVQQQLESSDLDQYRALLAKLQPSAELDVET
LAAALLKMAQGERPLILPPDAPARPRREFRERDDRFERRGDRNDRGPRSDERPARRERRD
VGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGELL
SHFTRTRILNKPMNMQLVGDAQPHERRERREGGERIGGRGFNSERAGNGRGRPFGGERRE
GGERRSGNRDGQRAPRRFNNA
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atggcagagtttgaaacctcttttgctgatctggggctttccgctcctattcttaacgcc
ctgtcggatatgggatacgaaaaaccatcccctatccaggcagaatgtattccccatctg
ctcaacggtcgcgatgtgctgggtatggcacagaccgggagtggtaaaacagcggcattt
tctctgccgttgttgaacaatgttaatccagaactgaaggcccctcagattctggtgcta
gcgcctacccgcgaactcgcagtacaagtagccgaagcgtgtggcgaattttccaagcat
atgcatggcgtcaacgtagtcgctttgtatggcggccagcgttatgacgtacaattgcgt
gcgttgcgtcagggcccacaagttgtggtgggtacgcccggacgtctgttagatcacctg
aaacgcggtacgttggatctgtccaatctgagcggcctggttctggatgaggccgatgaa
atgctgcgcatggggttcattgaagatgtagaaaacatcatggcgcagattccggatggc
caccagaccgctctgttctccgccaccatgccggaagcgattcgccgcattactcgtcgg
ttcatgaacgatccgcaggaagtccgtattcagtccagcgtgaccacccgcccggacatc
agccagagctactggacggtgtacggcatgcgcaaaaatgaagcgctgatccgtttcctg
gaagcggaagatttcgacgcggcgattatttttgtgcgtactaagaatgccacgctggaa
gtggccgaagcgctggagcgcagcggttataacagcgctgcattgaacggcgacatgaat
caggcgctgcgtgagcagacgctggaacgcctgaaagatggtcgtctggatatcctgatc
gcgaccgacgtcgccgcgcgtggtttggatgtagatcgtattagcctggtggttaactac
gatatcccgatggacgccgaatcctatgtgcatcgtatcggccgtactggtcgcgcgggt
cgcgcgggtcgtgcgttgctgttcgtggaaaatcgtgagcgtcgtttgttgcgcaacgtt
gaacgcaccatgaagttgactattccggaagtggaactgccgaatgcggaactgctgggg
cagcgccgtctggccaagttcgccgccaaggtacagcaacagttggaaagcagcgatctg
gatcagtatcgtgcgctgttggcgaagttgcagccgtctgcagaactggatgtggaaaca
ctggctgccgctctgctgaaaatggcgcaaggcgagcgtccactgattctgccgccggat
gcgccagcgcgtccgcgccgtgaattccgtgagcgcgacgatcgtttcgaacgtcgtggc
gaccgtaatgatcggggcccgcgtagtgatgaacgcccggctcgtcgtgagcgccgtgat
gtcggtgaaatggaactgtatcgtattgaagtgggacgtgatgacggtgtagaagttcgt
catatcgttggcgcgattgccaacgaaggggatatcagcagtcgttatatcggtaacatc
aagctgtttgcttcccattccaccattgagctgccgaaaggtatgccgggtgaactgctg
tcgcacttcactcgcacacgcatcctgaacaagccgatgaacatgcaattggtgggcgat
gcacaaccgcatgaacgtcgtgagcgtcgtgagggcggcgaacgtatcggcggtcgtggt
ttcaacagcgaacgcgccggtaacggtcgtggccgtccgtttggcggtgagcgtcgtgaa
ggtggcgagcgtcgcagtggcaatcgtgacggtcagcgtgctccgcgccgtttcaataat
gcctga
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