Musicola paradisiaca: Dd703_3730
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Entry
Dd703_3730 CDS
T00927
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dda
Musicola paradisiaca
Pathway
dda03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dda00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Dd703_3730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dda03021
]
Dd703_3730
03400 DNA repair and recombination proteins [BR:
dda03400
]
Dd703_3730
Enzymes [BR:
dda01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Dd703_3730
Transcription machinery [BR:
dda03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Dd703_3730
DNA repair and recombination proteins [BR:
dda03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Dd703_3730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
LPD39
Motif
Other DBs
NCBI-ProteinID:
ACS87485
UniProt:
C6C4S8
LinkDB
All DBs
Position
complement(4319645..4323868)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEQECEQLREELNETSSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDKVNAKGEGMVLTGPKEAERIYRAG
LAELHARVKVRITEYEKDPQGEWKAKTSLIDTTVGRSILWMIVPKGLPYTIVNQALGKKA
ISKMLNTCYRVLGLKPTVIFADQIMYTGFAYAARSGSSVGIDDMVIPAKKVEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTETVINRNGEEERQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGTADILVPRNTLLNEKWCDLLEENSVDAVKVRSVVGCETDFGVCAKCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSLKL
NNAKFVMNNAGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGDQVSGGETVANW
DPHTMPVITEVSGNIRFTDMIDGQTITRQTDELTGLSSIVVLDSAERTGGGKELRPALKI
VDANGNDVLIPGTDMPAQYFLPGKAIVQLEDGTQIGAGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGVVSFGKETKGKRRLVITPMDNGDPYEEMIPKWRQLNVFE
GERVERGDVISDGPESPHDILRLRGVHAVTRYIVNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVNSGSSEFLEGEQVEVSRVKIANRQLETDGKIPATYARDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRQANEPQS
APQVSAEEASANLAELLNAGLGGSDDE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgctctggcttcgccagacatgatccgttcctggtcttttggtgaagttaaaaag
ccggaaaccatcaactaccgcacgttcaagccggaacgtgacggtctgttctgcgcccgt
atcttcgggccggtaaaagactatgagtgcttgtgcggcaagtacaagcgcctgaaacac
cgcggcgtcatttgtgagaagtgcggtgttgaagtcacccagaccaaagtgcgtcgtgag
cgcatgggccacatcgaactggcgtcgccgactgcgcacatctggtttttgaaatcgctg
ccgtcccgcatcggtctgctgctggatatgccgctgcgcgatatcgagcgcgtgctgtac
ttcgaatcctatgtggtggtcgaaggcggtatgaccaacctggaacgtcgtcagatcctg
accgaagagcagtatctggatgcgctggaagagttcggcgatgaattcgacgccaagatg
ggcgccgaggctatccaggctctgctgaagaacatggatctggagcaggaatgcgagcag
ctgcgcgaagaactgaacgaaaccagttctgaaaccaaacgcaaaaagctgaccaagcgc
atcaagctgttggaagcgttcgtgcagtccggcaacaagccggaatggatgatcctgact
gtgctgccggtgctgccgccggatctgcgcccgctggtgccgctggacggcggtcgtttc
gcgacttccgatctgaacgatctgtaccgtcgcgtgatcaaccgtaacaaccgtttgaaa
cgtctgctggatctggctgcgccggatatcatcgttcgtaacgaaaaacgtatgctgcag
gaagcggttgacgccttgctggataacggtcgtcgcggtcgtgcgatcactggctccaac
aagcgtccgctgaaatctttggccgacatgatcaaaggtaagcagggtcgcttccgtcag
aacctgctgggtaagcgcgtggactactccggtcgttccgtgattaccgttggtccgtac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcgctggaactgttcaaaccgttc
atctacggcaagctggaactgcgtggcctcgcgaccaccatcaaagccgccaagaaaatg
gtggaacgcgaagaagccgtggtatgggacatcctggatgaagtcatccgcgaacacccg
gtactgctgaaccgtgcgccgacactgcaccgtctgggtattcaggcgtttgaaccggtg
ttgatcgaaggtaaagccattcagttgcacccgttggtgtgtgcggcgtataacgccgac
ttcgacggcgaccagatggccgttcacgtaccgctgacgctggaagcccagttggaagcg
cgcgcgctgatgatgtccaccaacaacattctgtccccggcgaacggcgaaccgatcatc
gttccgtctcaggacgtggtgttgggtctgtactacatgactcgcgacaaggtgaacgct
aaaggcgaaggcatggtgctgaccgggccgaaagaagcggagcgtatttaccgcgccggc
ctggctgaactgcatgcgcgtgtgaaagttcgtatcaccgaatacgaaaaagacccgcag
ggcgaatggaaagcgaaaaccagcctgatcgataccactgtaggccgttccattctatgg
atgatcgtaccgaagggtttgccttacaccatcgttaaccaggcgttgggtaagaaagcg
atctccaagatgctgaacacctgttatcgcgtgctgggtttgaaaccgacggttattttt
gccgaccagatcatgtacaccggttttgcttacgcggcgcgttccggttcttccgttggt
atcgacgatatggtgatcccggcgaagaaagtggaaatcatcagtgaagccgaagccgaa
gtggccgagattcaggaacagttccagtctggtctggtaacggcgggcgagcgctataac
aaagtcatcgatatttgggctgcggcgaacgagcgtgtggccaaagcgatgatggaaaac
ctttctaccgaaacggtgatcaaccgtaacggtgaagaggagcgtcaggtttcctttaac
agcatctttatgatggctgactccggtgcgcgtggttctgcggctcagattcgtcagctg
gcggggatgcgtggtctgatggcgaagccggacggctccatcatcgaaacgccgatcact
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacgcacggtgcgcgt
aaaggtctggcggataccgcactgaaaaccgcgaactccggttatctgacccgtcgtctg
gtcgatgtggcgcaggatctggtcgtgaccgaagacgattgcggtacgcacgaaggcatc
atgatgaccccggtcatcgaaggtggcgacgtgaaagagccgctgcgtgagcgcgtactg
ggccgtgtgacggcggaagacgtgctgaagccgggtactgccgacattctggttccgcgc
aacacgctgctgaacgagaaatggtgtgacctgctggaagaaaactcggtcgacgcggtg
aaagtacgctccgtggtaggttgtgaaaccgacttcggcgtgtgcgccaagtgctacggt
cgcgatctggcgcgtggtcacatcatcaacaaaggtgaggccatcggcgttatcgcggca
cagtccatcggtgaaccgggtacccagctgaccatgcgtaccttccacatcggtggtgcg
gcatcgcgtgcggcagccgagtccagcattcaggtgaaaaacaaaggtagcctgaaactg
aacaacgccaaattcgtgatgaacaacgccggtaagctggttatcacctcgcgtaacacc
gagctgaaactgatcgacgaattcggtcgtaccaaagaaagctacaaagtgccttacggt
gcggtgatggcgaaaggcgacggcgatcaggtcagcggcggcgaaaccgtggcgaactgg
gatccgcataccatgccggtgattaccgaagtgagcggtaacattcgcttcaccgacatg
atcgacggccagacgattacccgtcagaccgacgaactgaccggtctgtcttctatcgtg
gtgctggatagcgccgagcgtaccggcggtggtaaagaattgcgtccggcgctgaagatt
gtcgatgccaacggcaacgatgtactgattccaggcaccgatatgccggcccagtatttc
ctgccgggcaaagccatcgttcaattggaagacggtactcagatcggcgcgggcgatacc
ctggcgcgtattccgcaggaatccggcggtacgaaagatattaccggtggtctgccgcgc
gttgcggatctgttcgaagcgcgtcgtccgaaagagccggcgatcctggctgaaatcagc
ggcgtagtgtccttcggtaaagaaaccaaaggcaaacgccgtctggtgattacgccgatg
gataatggcgacccatacgaagagatgattccgaaatggcgtcagctcaacgtatttgaa
ggcgaacgtgtagagcgcggcgacgtgatctccgacggcccggaatctccgcacgacatt
ctgcgcttgcgtggcgttcatgcggtaactcgttacatcgtgaacgaagtgcaggaagtt
taccggctgcagggcgttaagattaacgataaacacattgaagttatcgttcgtcagatg
ctgcgtaaaggcaccatcgtcaattcgggcagctccgagttcctggaaggcgagcaggtg
gaagtttcgcgcgtcaagatcgccaaccgtcagttggaaacagacggcaagatcccggct
acttatgcgcgtgatctgttgggtatcaccaaagcatctctggcgacggaatccttcatt
tccgcggcatcgttccaggaaaccacgcgcgtgctgactgaagctgccgtggcgggtaaa
cgcgatgaactgcgcggtttgaaagagaacgtcattgtgggtcgtctgatcccggccggt
acgggttatgcctaccatcaggatcgtatgcgtcgccgtcaggcgaacgaaccgcagtct
gccccgcaggtgagtgctgaagaagcttctgcgaatctggctgaactgctgaatgcgggc
ctgggcggtagcgacgacgaataa
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