Duncaniella dubosii: E7747_06990
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Entry
E7747_06990 CDS
T09880
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ddb
Duncaniella dubosii
Pathway
ddb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ddb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E7747_06990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddb03019
]
E7747_06990
03009 Ribosome biogenesis [BR:
ddb03009
]
E7747_06990
Enzymes [BR:
ddb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E7747_06990
Messenger RNA biogenesis [BR:
ddb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E7747_06990
Ribosome biogenesis [BR:
ddb03009
]
Prokaryotic type
rRNA helicases
E7747_06990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QCD42042
UniProt:
A0A4P7W2J7
LinkDB
All DBs
Position
complement(1613785..1615503)
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AA seq
572 aa
AA seq
DB search
MKTFEELGVNEPLRKAVEELGFESPMPVQERVIPRLLGDAHDIIALAQTGTGKTAAFGLP
VLQRIDPDINRPQALILAPTRELCLQIGSDLADFSKYVPDVKVLPVYGGSSIESQIRMLK
KGVQVIVATPGRLIDLIKRGVVKLNDVHTVVLDEADEMLNMGFLESLEQILSYVPEERKM
LLFSATMPPDILKIAKRYMKDYEEIVVGSRNEGAENVRHLYYIVNARDKYLALKRIVDNS
PNIYAIVFCRTRRDTQEIADNLIRDGYNAEALHGDLSQQQRDIVMKKFRDHVVPLLVATD
VAARGLDVDSLTHVINYGLPDDTAVYTHRSGRTGRAGKSGVSIAIIHSREKGRLREIERI
IGKTFEHKEVPTPEHIIEKQLYNLADRIERVKVNEEEIAAYLPGISRKLEWLSEEDLLKR
VISLEFNRLLDYYKDAPKIDVIDVKPSKADRKRNKGEREHERPKNDKEKDRRTAERGMER
IYINVGKRDGFFAGNLIDMLNKLVTGKRVDVGRIDLLPAYSLFDVKKADARKVVGALTGA
DFYGKRIHSEIADADRDYSKIADKRKGKKGNK
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacatttgaagaactcggcgtcaacgagccactgcgcaaagccgttgaagaactc
ggatttgaatctccgatgccagtgcaggaacgtgtaataccccgtttgctcggcgacgca
cacgatataatagcccttgcccagacaggcacaggaaaaacggcggcattcgggctgccg
gtgctgcaacgcattgaccccgacatcaaccggcctcaggccttgattctcgcaccgaca
cgcgaactctgtctgcagatcggaagcgacctcgcagacttttcaaaatatgttcccgat
gtgaaagttctcccggtctacggtggctcaagtatcgaaagccaaatacgcatgctgaaa
aaaggagtgcaggtcatagtagcgactcccggacgtctcatagacctcatcaaacgcggt
gtggtcaagctcaatgacgtacataccgtggtgctcgacgaagccgacgagatgctaaac
atgggattccttgaatcactcgaacagattctttcatacgttccagaggaacgcaagatg
cttctgttttcagcgacaatgccgccggatatcctcaagatagccaaacgctacatgaag
gactatgaggaaatcgtagtaggcagccgcaacgaaggagctgaaaacgtacgccaccta
tattatatagtgaacgcgcgtgacaaatatctcgcccttaaacgaattgtcgacaactct
cctaacatatatgcgatagtcttctgccgcacacgtcgcgacacacaggaaattgccgac
aacctcatacgcgacggatataacgccgaagccctccacggcgacctctcgcaacagcag
cgcgacatagtgatgaaaaaattccgcgaccatgtagtcccgctgctcgttgccaccgac
gttgccgcacgaggtctcgatgtcgacagcctgacccatgtcatcaactacggacttcct
gacgatacagccgtctatacccaccgttcaggccgtacaggccgtgccggaaagtcaggt
gtatcaatcgccataatccactcccgcgaaaaaggacggctacgcgaaatcgagcgtata
atcggaaagacgtttgaacataaggaggtcccgactccggaacatattatcgaaaagcag
ctctacaatcttgcagaccgcatcgagcgagtcaaagtcaacgaagaagaaatcgccgca
tatcttccgggaatctcccgcaaactggaatggctctcggaggaagatttgctcaaacga
gtcatctctctcgaattcaaccgactcctcgactactacaaagacgcgcctaaaatcgat
gtaattgatgttaaaccgtcgaaagccgaccgcaaacgcaacaaaggcgagcgggaacat
gagcgtcctaaaaacgacaaggagaaagaccgccgtacagccgaacgcggcatggaacgt
atctatatcaacgtcggcaaacgcgacggtttctttgcaggcaacctcatcgatatgctc
aacaagctcgtcaccggcaagcgcgttgacgtaggccgcatagacctactgccggcctat
tcgctctttgatgtgaagaaggcagatgcccggaaagtagtcggagcgctcactggtgct
gatttctatggcaaacgcattcacagcgaaatcgccgacgctgaccgcgactactccaaa
atagcagataaacgcaaaggcaaaaagggtaacaagtaa
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