KEGG   Duncaniella dubosii: E7747_11375
Entry
E7747_11375       CDS       T09880                                 
Name
(GenBank) RNA-splicing ligase RtcB
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
ddb  Duncaniella dubosii
Brite
KEGG Orthology (KO) [BR:ddb00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:ddb03016]
    E7747_11375
Enzymes [BR:ddb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     E7747_11375
Transfer RNA biogenesis [BR:ddb03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    E7747_11375
 Prokaryotic type
   tRNA splicing ligases
    E7747_11375
SSDB
Motif
Pfam: RtcB
Other DBs
NCBI-ProteinID: QCD42834
UniProt: A0A4P7W497
LinkDB
Position
2564700..2565953
AA seq 417 aa
MKTIDGHDVKIFTDNIEANALAQINELLSIDVFSDKKIRIMPDVHAGAGCVIGFTGDLGD
KVIPNIVGVDIGCGMRILRLGRLSDIDYHAFNEHILANIPSGMRVREDKYGFTPLGVDEM
DIYREAKQLLTELYCYRELKDTARIKKAIGSLGGGNHFIELDKDEESNVYLVIHTGSRNL
GKQVADIYQARAVRHLIAGEDEFEESVRRTIEEYKAAGRRSELQAVIRKMRKERRMAVPS
LPPALCYVEGEMRRQYLHDMRLCQRWAVLNRKLISRLLMKFFPDVEVTEEFESVHNYISD
DNIIRKGAISALEGERCIIPLNMRDGSLLCTGKGNSDWNCSAPHGAGRVLSRSQAYQKIS
IDDFKASMQGIYSESVNDFTRDESPMVYKPADEIIANIGDTVNIDSVIRPIFNFKAS
NT seq 1254 nt   +upstreamnt  +downstreamnt
atgaagacaatagacggtcacgacgtgaagattttcactgacaacattgaggccaatgcc
ttggcccagattaatgaactgctctcaatcgatgtgttttccgacaagaaaatacgcatt
atgccggacgtacacgccggcgcaggatgcgtaatcggtttcaccggcgaccttggcgac
aaggttatccccaacatcgtcggtgtggacatcggctgcggtatgcgcatactcaggctc
ggccgtctctctgacatcgactaccatgctttcaatgaacatattcttgccaacataccc
tcaggcatgagggtgcgtgaggataaatacgggttcactcctctcggcgtggacgagatg
gatatctatcgtgaggcaaagcagctcctgaccgaactctattgctaccgtgagcttaag
gacaccgcacgcataaagaaagccataggttctctcggcggagggaatcacttcatcgag
cttgacaaggatgaggaaagtaacgtctatctcgtgattcacaccggatcgcgaaatctc
ggcaagcaggtggccgacatctatcaggctcgtgcggtcaggcacttgatcgccggagaa
gatgaatttgaggaatcagtcagacgtactattgaggaatacaaggctgccggacgccgg
tcggagctacaggctgtcattaggaaaatgcgcaaggagcgccggatggctgtgccgtca
cttccgcccgcgctctgttatgtcgaaggcgagatgcgccgacaatatctacacgacatg
cgtctgtgtcagcgctgggccgtgctcaaccgtaagctcatatctcgtctgctcatgaaa
tttttccctgacgtagaggtgaccgaagagtttgaatcggtccacaactacataagcgac
gacaacatcatccgcaagggggcgatttctgctttggagggcgaacggtgcatcattccg
cttaacatgcgcgacggatcgttgctttgcaccggcaagggaaattccgactggaactgt
tcggcaccccacggtgccgggcgtgtgttgagccgtagtcaggcatatcagaaaatttca
attgacgacttcaaggcttctatgcagggcatatattccgagtcggtcaatgacttcacc
cgcgatgaatccccgatggtctataaaccggccgacgaaattattgccaatatcggagat
acggtaaacatcgattctgtcatacgccccattttcaacttcaaagcttcatga

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