Duncaniella dubosii: E7747_13210
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Entry
E7747_13210 CDS
T09880
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ddb
Duncaniella dubosii
Pathway
ddb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ddb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E7747_13210 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddb03019
]
E7747_13210 (rnr)
03016 Transfer RNA biogenesis [BR:
ddb03016
]
E7747_13210 (rnr)
Enzymes [BR:
ddb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
E7747_13210 (rnr)
Messenger RNA biogenesis [BR:
ddb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E7747_13210 (rnr)
Transfer RNA biogenesis [BR:
ddb03016
]
Prokaryotic type
tRNA degradation factors
E7747_13210 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
Motif
Other DBs
NCBI-ProteinID:
QCD43151
UniProt:
A0A4P7W537
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All DBs
Position
2952296..2954551
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AA seq
751 aa
AA seq
DB search
MAQSKNAVAGSRNNIALMKKVNEFVAQQKNNTYNYKQVAHAIGATTATQQRNIALLLVEM
AFNGEIIEVSPGKYKSPQRGNEATGIFVRRSNGKNSVITDADGETIFVAERNSMRALNGD
KVRVSIAAHRRGAEPEAEVVEIIEKKDQTFIGTLKVDKHFAYLLTDSKYLATDIFIPKSR
LKGGRTGDKAVVKIVEWKEDCKNPSGEVIDILGRTGENNTEIHAILAEFGLPYKYPSAVE
KAADKIDAGITEEVIAQRIDMRDVLTFTIDPADAKDFDDALSFRVLPNGHYEIGVHIADV
THYVQPDTIIDREAQKRATSVYLVDRVVPMLPEHLCNGICSLRPDEEKLAFSVIFHMDDD
AKVISSKIARTVIKSNRRFAYEEAQQVIETGLGDCVEAIRKLNELAKIMRRQRYENGSVE
FDRAEVKFHIDDDGKALGVFFKVAKDANKLIEEFMLLANRTVATFVGKPKDKKKKKPKAF
VYRVHDVPDPTRLADLSAIARAFGYKVKASGTPREINRSINKMLSEVKGRGEENYLATLA
IRSMAKAVYTTDNIGHYGLGFDYYTHFTSPIRRYPDMMVHRLLERYMAGGRSVNLQKLED
QCKHSSDMEQTAAMAERSSIKYKQVEYMQEHIGETYSGIISGVTEWGLYIELNDNLCEGL
VPMRDLADDYYDFDEKNHCLVGRRYNHRYRLGDNVDIKVARADLEKKQLDFVLLDDKGQT
LRREGEDDLGKKMTVAEALSNNHGKKKRRRR
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atggctcaatcaaagaatgcagttgccggttcgcgaaacaatattgccctcatgaagaag
gtgaatgaatttgttgcgcagcaaaagaataacacatataattataagcaagtggcacat
gccataggagctacaaccgctacgcagcaacgcaatattgcgttgctgctggtggaaatg
gctttcaatggcgaaataattgaagtgtcacccggtaaatataaatctcctcagcgtggt
aatgaagctaccggcatctttgtgcgcaggagcaatgggaagaattctgtcattacagat
gctgatggcgaaacgatatttgtcgccgagcgcaattcgatgagagccctcaacggagac
aaggtgcgtgtcagcatcgctgcccaccgtcgaggcgctgaaccggaagccgaggtcgtg
gagattattgaaaagaaagatcagactttcataggcacattgaaagttgacaaacatttc
gcatatctgctgactgattcaaaatatcttgctactgatattttcatccctaaatccaga
ctcaaaggtggacgtacgggggataaagctgtggtaaagatagtcgaatggaaagaagac
tgcaaaaatccgagtggagaagtgattgacattcttggccgtacaggtgagaacaacact
gaaatccatgcgatacttgcagaatttggacttccgtataaatatccttcagctgttgag
aaagccgctgataaaattgatgctggaataacagaggaggttattgcccagcgtattgat
atgcgtgatgtccttacgtttacaatcgatccggcagatgcgaaggattttgatgatgcc
ctttcattcagggtactgccgaatggccactacgaaatcggtgtccatatcgcagatgtg
acacactatgttcagccggataccataatcgaccgtgaggcacagaaacgagcaacatca
gtctatctggttgaccgtgtcgtaccgatgctgccggagcatctctgtaacggtatctgt
tcattgcgcccggatgaagagaaacttgctttctctgttattttccatatggatgatgac
gcgaaagtcatcagttcgaagattgcacgaacagttattaaatcgaaccgtcgttttgcc
tatgaagaagcccagcaagtcatagaaactggccttggcgactgtgttgaagcaatccgg
aaactcaatgagcttgcgaaaattatgcgccgtcaacgctatgagaatggctctgtagag
tttgaccgtgcagaagtaaaattccatattgacgatgatggaaaggctctcggtgtcttc
tttaaagtcgcaaaggatgccaataagctgattgaggaattcatgttgcttgccaaccgc
acggttgcgactttcgtcggaaaaccaaaggacaagaaaaagaaaaagcccaaggctttt
gtctatcgagttcacgatgtccctgacccgacgcgccttgccgatctttcagctatcgcc
agggcctttggctataaggtgaaagcgtcaggcacaccccgggaaatcaatcggtctatt
aataagatgctttccgaggtcaaaggacgtggcgaagaaaactatctggctacacttgcc
atccgttcaatggctaaggccgtctacaccacagacaatatcggccactacggtcttgga
tttgattattatacgcatttcacttcacccatacgccgttatccagacatgatggttcat
cgtctgctcgaacgatatatggcaggagggcgcagtgtcaatcttcagaaacttgaggat
cagtgcaagcattccagtgacatggagcagacagccgcaatggcagagcgttcgtcaatc
aaatacaagcaggtcgaatacatgcaggaacatatcggagagacatattccggaattatt
tctggtgtcacggaatggggactgtatatcgagcttaatgataacttgtgtgaaggcctc
gtcccaatgcgtgatctcgccgatgactattatgactttgacgagaagaatcattgcctt
gtcggtcgtagatacaatcatagatatcgtcttggcgataatgtcgacatcaaggttgca
cgtgcggatcttgaaaagaaacagctcgattttgtacttctcgatgacaaaggtcagact
ttgcgtagagaaggagaagatgaccttgggaaaaagatgactgtggccgaagctctgtcc
aataaccacggaaagaagaaacgtcgtcgtagataa
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