Duncaniella dubosii: E7747_14015
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Entry
E7747_14015 CDS
T09880
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
ddb
Duncaniella dubosii
Brite
KEGG Orthology (KO) [BR:
ddb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ddb03009
]
E7747_14015 (rimO)
Enzymes [BR:
ddb01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
E7747_14015 (rimO)
Ribosome biogenesis [BR:
ddb03009
]
Prokaryotic type
ribosomal protein modification factors
E7747_14015 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
DUF2267
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
QCD43288
UniProt:
A0A4V1D3K1
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All DBs
Position
complement(3157516..3158826)
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AA seq
436 aa
AA seq
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MSKKIAVITLGCSKNLVDSERLMRMLADVGYDVADAASDEFIGSDGEKIVVINTCGFIGD
AKEESVNEILAWCEAKNEGAIDALYVMGCLSQRYADELPAEIPEVDRWYGKTDWSNLVLD
LVNRAPGSAPYDRVITTPRHHAYLKIAEGCNRFCSFCAIPLITGRYKSRSVEEIVDEVRM
LVCRGVKEFNVIAQDLTNYGKDLYGKVEIARLIDEIAKVEGVEWIRLHYAYPKDFPMELL
DVMSRHDNVCKYLDIALQHISDNVLENMRRHITGQETRELLAEIRRRVPGIHIRTTLMVG
FPGEGEKEFEELVEFVKEQRFERMGAFAYCEEEDTYGAKSFTDDIPDEVKQNRLSRLMAE
QEEISLSIQESKIGLEMRVVVDREEDEFYVGRTQFDSPEVDPEVLIRKTVPLKKGEFYDV
KVISALPFELMAEPVI
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagaaaattgcagtcattactttgggatgttccaaaaatcttgtcgattcggaa
cgtctgatgagaatgcttgctgatgtcggttatgatgttgccgatgctgcttctgatgaa
tttatcggtagcgacggcgagaaaattgttgtaatcaatacctgtggtttcatcggcgac
gccaaagaggagtcggtcaatgaaatcctcgcatggtgtgaggcaaaaaatgaaggcgca
atcgatgccctctatgtcatgggctgtctgtcgcaacgctatgccgatgagcttccggcg
gaaatcccggaggttgaccgttggtatggaaagacagactggtccaatctggttctcgat
cttgtaaatcgtgcgcccggaagcgctccatatgatcgtgtcatcaccactccgcgccat
catgcctatctgaaaatcgccgaggggtgtaaccgcttctgttctttttgtgccatccct
ctcatcacaggacgttataaatcccgctctgtagaggaaattgtcgatgaagtccggatg
cttgtctgcagaggtgtcaaagagttcaatgtcattgctcaggatctcacgaactatggc
aaggatttatatggtaaagtcgagattgcgcgcctgattgatgaaatcgccaaggttgag
ggtgtggaatggatacgtctgcactatgcctatccgaaggattttccgatggaactgctt
gatgtcatgtctcggcatgacaacgtgtgtaagtatcttgacattgcattgcagcacatt
tccgacaatgtgcttgaaaatatgcgtcgacatatcacaggacaggaaacgcgtgaattg
cttgccgagattcgtcgtcgagttcccggaatacatatccgaacgacgttgatggtcgga
ttccccggtgaaggagagaaagaatttgaggaacttgtagaatttgtcaaggaacagcgt
ttcgagagaatgggagcctttgcctattgtgaggaggaagatacctacggcgcaaagtct
tttacagacgatatccccgatgaagttaagcagaatcgtttgtcccgtctgatggctgag
caggaggaaatatcactttcgattcaggagtcgaaaatcggacttgagatgagagtggtg
gttgatcgtgaagaagatgaattctatgttggccgtacacagtttgattcgccagaggtc
gacccggaagtgcttatccgcaagacagtgccattgaagaagggcgaattctatgatgtg
aaagtaatttcagcgcttccattcgagctcatggctgagccggttatctaa
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