Dickeya parazeae: Dd586_0011
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Entry
Dd586_0011 CDS
T01138
Name
(GenBank) Sigma 54 interacting domain protein
KO
K14414
transcriptional regulatory protein RtcR
Organism
ddc
Dickeya parazeae
Brite
KEGG Orthology (KO) [BR:
ddc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ddc03000
]
Dd586_0011
Transcription factors [BR:
ddc03000
]
Prokaryotic type
Other transcription factors
Others
Dd586_0011
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcR
Sigma54_activat
Sigma54_activ_2
AAA_5
AAA
Mg_chelatase
AAA_16
NACHT
AAA_22
AAA_2
T2SSE
MCM
AAA_14
AAA_19
AAA_7
GYF
KAP_NTPase
AAA_30
ABC_tran
AAA_33
IstB_IS21
ATPase_2
NTPase_1
AAA_29
ResIII
AAA_18
PIF1
Motif
Other DBs
NCBI-ProteinID:
ACZ74909
UniProt:
D2C0G6
LinkDB
All DBs
Position
complement(13061..14650)
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AA seq
529 aa
AA seq
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MKRRVMIGVLGTALDKRGKRQNRWNRWRPTIAACQQPDLPIDRLELLYQPRSFGLAQQVQ
EDISQISPATTVNLHEVELTDPWDFEEVYTTFLDFAAHYPFDTENEEYLVHITTGTHVVQ
ICWFLLTEARYLPARLLQTSPSDHDDATPSPAGQYTVIDLDLSRYTAITSRFLREQQASV
SFLKAGIATRNATFNRIIDQIERVALRSSAPILLTGPTGAGKSFLANRIYQLKASRHQVN
GKFVAVNCATLRGDNAMSTLFGHVRGAFTGAQQSRAGLLREADGGILFLDEIGELGPDEQ
AMLLKAIEEKRFLPFGSDKEVSSDFQLIAGTHRDMPHWVEAGYFREDLYARINMWTFPLP
GLAQRCEDIEPNLDFELHRFAQQQQIQVRFDKEARQRFLAFACSEHASWRGNFRELGASV
HRMATLSEQGRINTALVDEEIQRLKQQWRSTTANTILPAHLGELDIFEQCQLERVLEVCR
QAHSLSEAGRTLFAVSRRQKKQPNDADRLRKYLARFGLSWDDVKNTASI
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcagagtgatgatcggcgtgctgggcacggcgttggataaacgcgggaaacgg
caaaatcgctggaatcgatggcggccgaccatcgccgcctgccagcagccggatctgccg
attgaccgactggaattgctctatcagccacgcagtttcgggctggcacaacaggttcag
gaagatataagccagatatcgcctgccaccacggtgaatctgcatgaggttgaactgacc
gacccctgggacttcgaagaggtctacaccacgtttctcgacttcgcggcgcactacccg
ttcgatacggaaaacgaagaatatctggtacatattacgaccggcacgcatgtggtacag
atttgctggttcctgctgacggaagcgcgatacctgccggcccggctgctgcaaaccagc
ccgtcggaccatgacgacgcaacaccgtctcccgccgggcagtacaccgttattgacctc
gatcttagccgttacaccgccattaccagccgattcctgcgggaacaacaagcatccgtc
tcatttctgaaagcgggtatcgccacccgtaatgcaacgtttaaccgcatcatcgaccaa
attgaacgggttgccctgcgttcttccgcgcccattttgttaaccggccccaccggcgca
ggcaaatcttttctggccaaccgtatttatcagctcaaggcatcgcgccatcaggtcaat
ggaaagtttgtcgccgtcaattgcgccacactgcgcggcgataacgcgatgtcgacgttg
tttggtcacgttcgcggcgcattcaccggggcacaacaatcacgggcagggctgttgcgg
gaagccgacggtggaatcctgtttcttgatgaaatcggtgagttggggccggacgaacag
gcgatgctgctgaaagcgatagaagaaaaacgctttctgccgtttggttccgataaagaa
gtcagcagcgattttcagttgattgccggcactcaccgggatatgccgcattgggtggag
gccgggtattttcgtgaagacctgtacgctcgcatcaatatgtggacttttccgctaccg
ggtctggcgcaacgttgtgaagatatcgaacctaatctggacttcgagttacaccgtttt
gcccaacagcaacaaatccaggtgcggttcgataaagaagcgcgccagcgttttctggcc
tttgcctgttcggagcacgccagttggcggggcaactttcgcgagctgggtgccagcgta
caccgtatggcgacgctatccgagcaagggcgcattaataccgcgctggtagatgaagaa
attcaacgtcttaaacagcaatggcgcagcacaaccgccaatacgatattgccggcccac
ctcggtgagctggatatcttcgagcagtgccagcttgagcgagtgttagaggtatgccga
caagcccacagcttgtcggaagccggacgtacactatttgccgtttcgcgccgacaaaaa
aaacagcccaacgacgccgacaggctacgtaagtatctggctcgctttgggttgagctgg
gatgacgtgaaaaacaccgcatcgatataa
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