Dickeya parazeae: Dd586_1578
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Entry
Dd586_1578 CDS
T01138
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ddc
Dickeya parazeae
Pathway
ddc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ddc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dd586_1578
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddc03019
]
Dd586_1578
03009 Ribosome biogenesis [BR:
ddc03009
]
Dd586_1578
Enzymes [BR:
ddc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Dd586_1578
Messenger RNA biogenesis [BR:
ddc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Dd586_1578
Ribosome biogenesis [BR:
ddc03009
]
Prokaryotic type
rRNA processing factors
Dd586_1578
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
ACZ76444
UniProt:
D2BXJ0
LinkDB
All DBs
Position
complement(1778883..1782110)
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AA seq
1075 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSNYNSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALGSLELPDGMGLIVRTAGVGKSADAL
QWDLAFRLKHWEAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILELA
KEHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLREAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKREAVNAIEKRQGGVRAIIVPHDGME
TPHYAVLRIRKGEEKQALSYMLPQLLDAESQQATEEQVSERRAPEQPALASFTMPDIPQD
EAQPAPTTPAPSVEKPASSERGLFGRFIGALKGMFASSDAVKDKPAEAAKTESDDQEQKQ
DRRNNRRQSGRRDRTRDNREPRERGERGERDEQRRNKRTQQQNADADTTAVAETSGQDKA
VRDEQRREQRAERQRRRQEEKRQAQNDVKELNTAAVEPEDAIAAEQEKPVQVMPRRQRRQ
LTQKVRVEDGSAVGAGEATVENVDALPLAVSYEESQVEKAPESATSATDVADTENEVTTE
NNRENGLPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLAQASASPEMASGKVWVRYP
VAQPQQPERVEELNTTTDEPLSAAPVLATALTALPDVATTDVTTDLDTAPASTPVEENPT
AAPVLPSAQQDVAPVEATQPVESTVQQAATAPLEVQEPTSQVEKPQVEEPVAHVAERAEE
TPATVVADDATTASSGDESVDAQPTEQAPVIHAPVEADPAPVAQKPVAALVPADTTITQH
YATAPMTRAPAPAYIPDAPRVSDWQRPAFEFTGKGSAGGHSAVNQASAPATRPVE
NT seq
3228 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcagcaggaagagttgcgtgtcgccttggttgat
ggtcagcggctctacgatttggacattgaaagccctggacacgagcagaaaaaggcaaac
atttacaaaggcaaaatcacccgcattgaacccagccttgaagccgcttttgttgattat
ggcgcagagcgacatggcttccttcccctcaaagaaatcgcacgcgaatacttccccagc
aattacaactctcacggccgcccgaatatcaaagacgtgctccgtgaaggccaggaagtt
atcgttcaggtggacaaagaagagcgcggcaacaaaggggctgccttaacgacgttcatc
agtctggcaggcagctatctggtgctgatgccgaataacccccgcgctggcggtatttcc
cgccgaattgagggggatgaccgtaccgaattgaaagaagcgcttggctcactggaattg
ccagacggcatggggctcatcgtccgtactgccggggtgggtaaatccgccgacgcattg
cagtgggacctggcgtttcgactgaaacactgggaagcgatcaaaaaagcggcggaaggc
cgcccggcaccattcctgattcatcaggaaagtaatgtgattgtccgtgcgtttcgtgat
tacctgcgcccggatatcggcgaaatcctgatcgataaccccaaaattctggaattggcc
aaagagcatatcgctgcgctgggccgtccggacttcagcagtaaaataaagctgtatacc
ggtgaaattccgctgttcagccattatcagattgaatcgcagatagagtccgccttccag
cgtgaagtccgtctgccttctggcggttctatcgtcatcgataccaccgaagcgttgacc
gctatcgatatcaactccgctcgggccacacgcggcggcgatatcgaagaaaccgcgttt
aataccaaccttgaagccgctgatgaaattgcccgccagttacgtctgcgcgacctgggt
ggtttgatcgttatcgacttcatcgacatgacaccagttcgccatcaacgcgaagtggaa
aaccgcctacgtgaagccgttcgccaagaccgcgcccgtattcagattggtcgcatttca
cgctttggcttgttggagatgtcccgtcagcgtctgagcccttcactgggcgaatccagc
catcatgtctgccctcgctgtagcggcaccggtacgattcgtgacaacgaatcactgtcg
ctgtctatcctgcgattgattgaagaagaggcgctgaaagaaaacacccaagaagtgcat
gcgattgtaccagtgcctatcgcgtcttatctgctcaacgagaagcgtgaagccgttaac
gcgattgaaaaacgccagggcggcgtacgcgctattatcgtcccgcacgacggtatggaa
accccacactacgccgtactgcgcatccgtaaaggtgaagaaaagcaggccctgagctac
atgttgcctcaactgctggatgcagaatcccaacaggcgacggaagaacaggtttctgag
cgtcgggcaccggaacaaccggctctggcctccttcacgatgccggatattccacaagat
gaagcccaacctgctccaaccaccccggctccgagtgtggaaaaaccagcctcttccgag
cgcgggttgtttggccgatttattggtgcgctgaaagggatgttcgcgtcctctgatgcc
gttaaagataaaccggctgaagcagcgaaaaccgagtctgacgatcaggaacagaagcag
gatcgtcgaaacaatcgccgtcagtctggccgacgtgatcgtacccgtgataatcgcgaa
ccgcgtgaacgtggtgaacgtggtgaacgtgatgagcaacgccgtaacaagcgtacacag
caacaaaatgccgacgccgataccaccgcggtagcagaaacatccgggcaggataaggcg
gtacgtgacgaacaacgtcgtgagcaacgcgctgaacgccaacgtcgccgtcaggaagaa
aaacgtcaggcacagaatgacgttaaagaactgaatacggccgccgtcgaaccagaagac
gctattgccgccgaacaggaaaaaccggtacaggtaatgccgcgtcgtcaacgccgtcag
ttgacccagaaagtgagggtggaagacggcagcgctgttggtgctggagaggcgacggta
gagaatgttgacgcgttgcctctggcggtatcctacgaggaatcgcaggtagagaaagcg
ccggagtcagcgacctcagccaccgatgtggccgatacggaaaacgaggtaacaaccgag
aataaccgtgaaaacggcttgccgcgacgttcccgccgctcacctcgccatctgcgcgtc
agtggtcagcgccgtcgtcgttaccgcgatgagcgttaccctacacagtcgccgatgccg
ttggcacaagcgtctgcttcaccagaaatggcttcaggtaaagtctgggtccgctatccg
gttgcgcaaccacagcaaccagagcgtgtagaagaactgaacacgacgaccgatgagcca
ctgtctgccgcaccggttctggcaactgccctgacagcgttacctgatgtcgctacaact
gatgtcactaccgatctggatacagcacctgccagcaccccggtcgaggagaatccgacc
gctgcgccggtacttccatcggcgcagcaggatgttgccccagtcgaagccactcaaccc
gttgaaagcactgtacagcaggcggctacagcgcctttagaagtacaagaaccgacgtca
caagttgagaagccacaggttgaagaaccggttgcgcatgttgcagaacgcgctgaagaa
acgcctgctaccgtcgttgctgatgacgccacgacagccagcagcggtgatgaatccgtt
gatgctcagccgaccgaacaagcgccggtgattcatgctcctgtggaggctgatcctgct
cctgttgctcagaaaccggtggccgcattggtgccagcggataccactatcacgcagcat
tacgccactgcaccgatgacacgagcaccagcaccggcttatattccggatgcaccgcgt
gtcagcgactggcaacgtccggcgtttgagtttaccggcaaaggttctgccggcggccac
tctgccgttaatcaggccagtgctccggcaacgcgtcctgtggaataa
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