Dickeya parazeae: Dd586_1694
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Entry
Dd586_1694 CDS
T01138
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
ddc
Dickeya parazeae
Brite
KEGG Orthology (KO) [BR:
ddc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ddc03016
]
Dd586_1694
Enzymes [BR:
ddc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Dd586_1694
Transfer RNA biogenesis [BR:
ddc03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Dd586_1694
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
Motif
Other DBs
NCBI-ProteinID:
ACZ76560
UniProt:
D2BXV6
LinkDB
All DBs
Position
complement(1918624..1920555)
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AA seq
643 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRAEGIVKATDKGFGFLEADAQKSYFIPPPHMKKVMHGDRI
IVTLHTEKEREIAEPESLVEPFLTRFVGRVQKKDDRLSIVPDHPLLKDAIPCRPARGVEQ
DFKEGDWAVAEMRRHPLKGDRGFFADLTQYITTGDDPLAPWWVTLSRHNLEREAPNADAA
DLDDNALEREDLTGLDFVTIDSASTEDMDDALYVQDNGDGTLEMTVAIADPTAYVRADSE
LDAIARQRAFTNYLPGFNIPMLPRHLSDDICSLRPNERRPVLACRMTVGADGALSQIRFF
AAWIESRAKLVYDEVSDWLEQRGDWQPQSDNIASQIRLLHRVCQARSAWRSTHALVFRDR
PDYRFLLGEKGEVLDIVTEPRRIANRIVEEAMIAANVCAAQVLRDTLGFGIYNVHTGFDP
VSIDQAVAVLESNGIHAEAQQLLTLEGFCILRRELDAQPTQFLDSRIRRFQTFAEISTAP
GPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAVITHTAADKPQDEVTQQLAERRRLNRMA
ERDVSDWLYARFLKDKAGTDTRFTAEIMDVNRGGLRVRLLENGASAFIPASFIHAVRDEL
VCSQETGIVTVKGEPVYRQSDTLTVVLTEVRLETRSIIAKPAA
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccgctgcttgcgcagcttaaacagcaactccactctcagacgcca
cgagcggaaggtatcgtcaaagccaccgacaaaggatttggttttcttgaagccgacgcg
cagaagagctacttcatcccgccgccgcacatgaaaaaagtaatgcacggcgaccgcatc
atcgtcacgctgcataccgaaaaagaacgcgaaatcgcggaaccggaatcgctggtggaa
ccgtttctgacccgctttgtcggccgggtacagaaaaaagatgaccgtttgtctatcgtg
ccggatcatccgttgctgaaagacgccattccctgccgcccggcgcgtggcgtcgagcag
gactttaaagaaggcgattgggcagtcgcggaaatgcgccgtcatccgttgaaaggcgat
cgtggtttctttgctgacctgacccagtacattactaccggtgatgacccgctggccccc
tggtgggtgacgctgtcgcgccataatctggaacgcgaagcaccgaacgccgacgccgcc
gatctcgatgacaatgcgcttgagcgtgaagacctgaccgggctggactttgtcactatc
gacagcgccagcaccgaagacatggatgacgccttgtacgtgcaggacaacggcgacggt
acgctggagatgacagtggccatcgccgacccgaccgcttacgtgcgagccgatagcgag
ctggacgccattgcccgtcaacgcgcgtttaccaactacttgcccggcttcaatattccg
atgctgccgcgccacttgtcagacgacatctgctcgctgcgcccgaacgaacgccgcccg
gtgctggcctgccgcatgaccgtcggcgctgatggcgcactgagccagattcgcttcttt
gccgcctggatcgaatcacgcgccaagctggtatacgacgaagtatcggactggctggaa
caacgtggcgactggcagccgcagagcgataacatcgccagccaaatccgtctgttgcat
cgcgtttgtcaggcgcgcagtgcctggcgttccacccatgcgctggtgttccgcgatcgc
ccggattatcgcttcttgttaggcgagaaaggcgaagtgctggatatcgttaccgagccg
cgtcgtatcgctaaccgcatcgtggaagaggcgatgatcgccgccaacgtctgtgcggca
caggtgctgcgcgacacattaggtttcggcatttacaacgtccacaccggcttcgatccg
gtcagcattgaccaggcggtcgccgtgctggagagcaacgggattcatgccgaagctcag
caactgctgacgttggaaggcttctgtatcctgcgtcgtgaactggacgcccaaccgacc
cagttcctcgatagccgtatccgtcgtttccagacattcgcggaaatcagcaccgctccc
ggtccacactttggcctgggtctggaggcttacgccacctggacgtcaccaattcgtaaa
tacggcgatatggttaaccatcgtctgctcaaggccgtcatcacccataccgcggcagac
aaaccgcaggatgaggtcacgcagcagttggctgaacgtcgtcgtcttaaccgtatggca
gaacgtgacgtcagtgactggttgtacgcccgtttcctgaaagacaaagccggtaccgac
acccgctttaccgccgagattatggatgtcaatcgtggtggcttgcgtgtacgtctgctg
gaaaacggggcttccgccttcattcccgcctcgtttatccacgcggtacgcgacgagctg
gtctgcagtcaggagaccggcatcgtgacggtgaaaggcgaacccgtctatcgccaaagc
gataccctgacggtggtattaaccgaagtgcggcttgaaacgcgcagcattatcgccaaa
cccgctgcctaa
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