Dickeya parazeae: Dd586_2108
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Entry
Dd586_2108 CDS
T01138
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ddc
Dickeya parazeae
Brite
KEGG Orthology (KO) [BR:
ddc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ddc03032
]
Dd586_2108
03400 DNA repair and recombination proteins [BR:
ddc03400
]
Dd586_2108
Enzymes [BR:
ddc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Dd586_2108
DNA replication proteins [BR:
ddc03032
]
Prokaryotic type
DNA Topoisomerases
Dd586_2108
DNA repair and recombination proteins [BR:
ddc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Dd586_2108
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
CK_II_beta
Motif
Other DBs
NCBI-ProteinID:
ACZ76962
UniProt:
D2C053
LinkDB
All DBs
Position
complement(2394144..2396765)
Genome browser
AA seq
873 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHVRDLPTSGSGSASKKGAEGSAEKAKSG
EKAKKAVKKDEKTALVNRMGVDPYHGWQAHYEILPGKEKVVSELKTLAQNADHIYLATDL
DREGEAIAWHLREIIGGDDKRFSRVVFNEITKNAIRQAFEKPGELNINRVNAQQARRFMD
RVVGYMVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEYWELHADLLANAET
ALQMQVTHHQGKPFRPVNQAQTQAALSLLEKASYVVAEREDKPTSSKPGAPFITSTLQQA
ASTRLGFGVKKTMMMAQRLYEAGHITYMRTDSTNLSQDALTMARDYIQSEFGKRYLPDAA
NLYTSKENSQEAHEAIRPSDVKVLADQLKDMEADAQKLYQLIWRQFVACQMTPAQYDSTT
LLVSAGDYQLRAKGRTLRFDGWTKVMPALRKSDEDRTLPTVDVGQALSLEKLLPSQHFTK
PPARYSEASLVKELEKRGIGRPSTYAAIISTIQDRGYVRVENRRFYAEKMGEIVTDRLED
NFRELMNYDFTARMENSLDLVANSQAEWKAVLDEFFAEFSKQLETAELEPDEGGMKPNQM
VLTSIDCPTCSRKMGIRTASTGVFLGCSGYALPPKERCKTTINLIPEAEVLNVLEGDEAE
TNALRARRRCSKCGTAMDSYLIDNQRKLHVCGNNPSCDGYEIEHGEFRLKGYDGPVVECE
KCGSEMHLKMGRFGKYMACTNETCGNTRKILRNGEVAPPKEDPVPLPELACEKSDAYFVL
RDGAAGVFLAANTFPKSRETRAPLVEELVRFRDRLPEKLRYLADAPVTDPEGNKTLVRFS
RKTKQQYVSSEKEGKATGWSAFYVDGKWAEASR
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctctcgttatcgtcgagtccccggcaaaggccaaaacgattaataagtac
cttggcaatgactacgtggtgaagtccagcgtagggcatgtacgtgacttgccgaccagc
ggttcgggttccgcgagcaagaaaggcgctgaaggctccgccgagaaagccaaaagtggc
gagaaggccaagaaagcggtcaaaaaagatgaaaaaaccgcactggttaatcgcatgggc
gttgatccgtaccatggctggcaagcccattatgagatcctgcccggcaaggaaaaagtg
gtctcagagttaaaaacgttggcacagaatgccgaccacatctacctcgcaaccgacctt
gaccgcgaaggggaagccattgcgtggcacctgcgggaaattatcggtggtgatgacaag
cgttttagccgtgtggtgtttaacgaaatcaccaagaatgccattcgtcaggcgttcgaa
aaaccgggcgaactgaatatcaaccgtgttaatgcccaacaagcacgccgttttatggat
cgcgtggtggggtacatggtatcgccgttgttgtggaagaaaattgcccgcggattgtct
gccggacgagtgcagtcagtggcggtgcgtctggtagtggaacgcgagcgtgaaatcaaa
gcgtttgttccggaagaatactgggagttgcacgccgatctgctggcgaatgccgagacg
gcattgcagatgcaggtaacgcatcatcagggtaaacccttccgtccggtaaatcaggca
cagacacaggcggcgctcagcctgttggaaaaagccagctatgtggtcgctgagcgggaa
gacaaaccgaccagcagcaaaccgggcgctccctttattacctctacgctgcaacaagcc
gccagcacccgtctgggctttggcgtgaaaaaaaccatgatgatggcgcagcgactgtat
gaagccggtcacatcacctacatgcgtaccgactccacgaacctgagtcaggatgcgctg
acgatggcgcgtgattatatccagagtgaatttggtaaacgctatctgccggatgccgct
aacctgtacaccagcaaggaaaattcacaggaagcgcacgaagcgatccgtccttctgat
gtcaaggtgctggctgaccagcttaaagacatggaagctgatgcacaaaagctgtaccaa
ctgatttggcggcaattcgtggcgtgtcagatgacaccggcccagtatgactccacgaca
ctgttggtcagtgccggggattatcaactgcgcgccaaagggcgtaccctgcgttttgat
ggctggacgaaagtgatgccggcattacgcaagagcgatgaagaccggacgctgccgact
gtcgatgtgggacaagcgttgtcactggaaaaattgttgccaagccagcattttaccaag
ccaccggcacgttacagcgaggcttcgctggttaaggaactggaaaagcgcggcatcggc
cgtccttccacctatgccgctatcatttctacgattcaggatcgtggttatgtccgggta
gaaaatcgtcgtttctatgcggaaaaaatgggggaaatcgtcaccgaccggctggaagat
aacttccgcgagttgatgaattatgatttcaccgcgcgtatggagaacagccttgatctg
gttgccaacagccaggccgaatggaaagccgtgctggatgaattctttgctgaattcagc
aagcaactggaaaccgccgagctggagccggatgaaggcgggatgaagccgaatcagatg
gtgctgaccagcattgattgcccgacctgtagtcgtaagatgggtattcgaaccgccagt
accggggtgtttctggggtgctcgggttatgcgttgccgccgaaagagcgctgcaaaacc
accatcaacctgatcccggaagcagaagtgctgaacgtgctggaaggtgatgaggccgag
accaatgcgctgcgtgctcgtcgccgttgttcgaaatgcggtacggcgatggacagttac
ctcatcgacaatcagcgtaaactgcatgtatgcggtaacaacccatcctgcgatggctat
gagattgaacacggcgagttccggcttaaggggtatgacggcccggtcgttgagtgtgag
aagtgcggttcggaaatgcacctgaagatggggcgtttcggcaagtacatggcctgtacc
aacgagacctgtggtaatacccgtaaaattctgcgtaacggtgaagtggccccgccgaaa
gaagacccggtaccactgccggaactggcgtgtgaaaagtccgacgcgtattttgtactg
cgcgacggcgctgccggtgtgttcctggcggccaatacgttcccgaaatcacgggaaacc
cgtgcgccgttggtggaagagctggtgcgtttccgcgatcgcctgccggaaaaactgcgt
tatctggctgatgcgccggtaaccgacccggaaggcaataaaacgctggtgcggtttagc
cgtaagaccaaacaacagtatgtttcttctgaaaaagaaggaaaggcaacgggatggtcg
gcgttctatgttgacggcaaatgggcagaggccagccgttaa
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