Dickeya parazeae: Dd586_2253
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Entry
Dd586_2253 CDS
T01138
Name
(GenBank) Exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
ddc
Dickeya parazeae
Pathway
ddc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ddc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
Dd586_2253
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ddc03400
]
Dd586_2253
Enzymes [BR:
ddc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
Dd586_2253
DNA repair and recombination proteins [BR:
ddc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
Dd586_2253
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Dd586_2253
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Dd586_2253
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Phage_N_antitermin
Motif
Other DBs
NCBI-ProteinID:
ACZ77104
UniProt:
D2C133
LinkDB
All DBs
Position
2544930..2546360
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AA seq
476 aa
AA seq
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MQNQHIEPTFFIHDYETFGKHPAKDRPAQFAGVRTDLNFTVIGEPVVIYCQPADDYLPDP
EAVMITGITPQVAQKRGVREAEFANHIHEAFSVPGTCIMGYNNIRFDDEVSRNLFYRNFF
DPYAYSWQQGNSRWDLLDMLRACYALRPDGIVWPENDDGFPSFKLEHLTRANGVEHTQAH
DAMSDVYATIAMARLLKQAQPKLFDYLYALRNKNKVSALIDIPQMKPLVHVSGMFGAARG
NTSWIVPLAWHPDNRNAVIVCDLAGDIQPLLALDADELRTRLYTRRELLAEDESPVPIKL
VHINKCPVLAPASTLRPEDAERLGIDRQHCLNNLQLLRQNSSVREKVVALFADAPPFEAA
KDVDLQLYDGFFSDADRAAMAIIRKTDAQHLPALNLQFADRRVEELLFRYRARNFPGTLD
EQEQQRWLAHRREVFTAERLQNYFDTLDQLYQQHDGDEKKTTQLKALFAYAQQLLA
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
gtgcaaaaccaacacatcgaacccactttttttatccacgattatgagacttttggcaaa
cacccagccaaagatcgcccggcacagttcgcaggcgtccgtactgatttgaattttacc
gtgattggcgaaccagtcgtgatctactgccagccagccgatgactacctgcccgacccg
gaagcggtaatgattaccggcatcacgccgcaagtagcacaaaaacggggagtacgcgaa
gccgagtttgccaaccacatccatgaggcgttcagcgtgccaggcacctgcatcatggga
tacaacaatatccgctttgatgacgaagtcagccgtaacctgttctatcgtaacttcttc
gacccctatgcctacagttggcaacagggcaattctcgctgggatttgctggacatgttg
cgggcatgctatgccttgcgccctgatggcattgtctggccggaaaacgacgacggtttt
cccagtttcaagctggagcatctgactcgtgccaatggcgttgagcacacgcaggcgcat
gatgcgatgtccgatgtctatgccaccattgcgatggcgcggctgcttaaacaggcacaa
cctaaactgttcgattatctctatgcgttacggaacaaaaataaagtcagcgcgttaatc
gatatcccgcaaatgaaaccactggtacatgtttccggtatgtttggtgccgcacggggt
aataccagttggattgtaccgctggcctggcatccggataaccgcaacgcggtcattgtt
tgcgatctggcgggagatattcagccattactggctctggatgcggatgaactgcgtacc
cgactttatacccgccgcgagctgctggctgaagatgaatcgcctgtccctatcaaactg
gtgcatatcaataaatgtcctgtgctggcaccagccagtacactgcgaccagaagacgct
gagcggctgggcatcgaccgtcagcattgtctgaataatttacagttgttgcgtcagaat
agtagcgtaagagagaaagtcgtggcgctatttgccgatgcaccgccgtttgaggccgct
aaggacgtcgacctgcaactttacgatggcttttttagtgacgccgatcgcgccgcgatg
gccattatccgtaaaaccgatgctcaacatctccctgcactgaatctccaatttgccgat
cgtcgggtggaggagttactgtttcgctatcgggcgcgcaacttccccggtacgctggac
gaacaggagcaacaacgctggctggcacatcgtcgagaggtatttaccgcagagcggtta
caaaactatttcgatacgcttgatcagctctaccaacagcacgatggcgacgaaaagaaa
actacgcagctaaaggcactgtttgcctatgcacaacaactgctagcctga
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