Dickeya parazeae: Dd586_3862
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Entry
Dd586_3862 CDS
T01138
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ddc
Dickeya parazeae
Pathway
ddc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ddc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dd586_3862
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddc03019
]
Dd586_3862
03400 DNA repair and recombination proteins [BR:
ddc03400
]
Dd586_3862
Enzymes [BR:
ddc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Dd586_3862
Messenger RNA biogenesis [BR:
ddc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Dd586_3862
DNA repair and recombination proteins [BR:
ddc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Dd586_3862
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
zf-CXXC
zf-CCCH_8
Motif
Other DBs
NCBI-ProteinID:
ACZ78692
UniProt:
D2BYA0
LinkDB
All DBs
Position
complement(4406247..4408091)
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AA seq
614 aa
AA seq
DB search
MSTADVLNADVLSKEMLAMQVLRETFGYQQFRPGQQDIINAAINGRDCLVIMPTGGGKSL
CYQIPALVLDGLTLVVSPLISLMKDQVDQLQAYGVAAACLNSTQSREQQQAVFNACRRGE
LKLLYIAPERLSTDGFLDQLVHWNTSLIAIDEAHCISQWGHDFRPEYRALGQIKQQCPTL
PIVALTATADDTTRQDIARLLDLRDPLVNVSSFDRPNIRYTLVEKFKPLDQLWLFIHGQR
GKSGIVYCNSRAKVEDLCARLQNRGLSVGAYHAGLDNDRRSQVQEAFLRDDLQVVVATVA
FGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAALFYDPADMAWLRRCLEEK
PAGMQLDIERHKLNAMGAFAEAQTCRRLVLLNYFGENRQQSCGNCDICLDPPRRYDGLVD
AQKALSCVYRVGQRFGIGYIAEVLRGANNQRIREFGHDKLPVYGLGKDKTQEQWVSILRQ
LIHLGLLAQNIAHHSALQLTESARPVLRGEVPLQLAVPRVSSLSKPRASQKSYGGNYDRK
LFAKLRKLRKSIADEDNIPPYVVFSDATLLEMAELLPLTASELLAVNGVGQRKLERFGVP
FMTLIRDHLDSGDD
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
gtgtctacggcagacgtattgaatgcggacgtattgagtaaagaaatgctggcgatgcag
gtactgcgcgaaaccttcggctaccagcaattccggccgggccagcaggacattatcaat
gccgccatcaacgggcgcgactgcctggttattatgccgaccggcggggggaagtcgctg
tgttatcagatcccggcgctggtgctggatgggctgacgctggtggtatcgccgttgatt
tccctgatgaaagatcaggtcgatcaattgcaggcctacggcgtggcggcggcgtgcctc
aattcgacccagagtcgtgaacagcaacaggcggtgttcaacgcttgccgtcgtggtgag
ctgaagctgttgtacattgcgccggaacgcctctcgaccgacggttttctggaccaactg
gtgcactggaatacgtcgcttatcgccattgatgaagctcactgtatttcccagtggggg
cacgacttccgccctgaataccgcgcgttggggcagattaagcaacagtgccctacactg
ccgattgtggcgttgaccgcgaccgctgacgacaccacccgtcaggatatcgcccgtctg
ctggatttgcgcgatccgctggtcaatgtcagcagttttgaccgacccaatatccgttac
acgctggtggaaaaattcaaaccgctcgatcaactgtggctatttatacatgggcagcgc
ggtaaaagcggcatcgtgtattgcaacagccgggcgaaagttgaagacctgtgtgcccgg
ttgcaaaaccgtgggctgagtgtcggcgcctatcacgccgggctggacaacgaccgtcgc
tctcaggtgcaggaggcgtttttgcgcgacgacctgcaggtggtggtggctaccgtggcg
ttcgggatggggatcaataaaccgaacgtccgttttgtggtgcatttcgatatcccacgt
aatatcgagtcctattatcaggaaaccggtcgcgcgggtcgcgatgggttgcccgccgaa
gcggcgctgttttatgacccggcggatatggcctggttgcgccgttgtctggaggagaaa
ccggcggggatgcaactggatattgaacggcacaaactcaatgcgatgggggcgtttgcc
gaagcgcaaacctgccgtcgtctggtgctgctcaattattttggcgaaaaccgccagcag
tcgtgcggcaattgcgatatttgccttgatccaccacggcgttatgacgggctggtggat
gcgcagaaagccttgtcctgtgtttaccgggtggggcaacggtttggtatcgggtacatc
gccgaagtgctgcgtggtgccaataatcagcgtatccgcgaattcggtcacgacaaattg
ccggtgtatggcctggggaaggacaaaacccaggagcagtgggtcagtattttgcgtcag
ttgattcatctgggcctgctggcgcaaaacattgcccatcattccgcgctgcaactgacc
gagtcagcgcggccggtattgcgcggtgaagtgccgttgcaactggcggtcccaagggtg
agtagcctgagtaagccgcgtgccagccagaaaagctacggcggcaattacgatcgcaag
ctgttcgccaagctgcgtaaattgcgtaaatccattgcggatgaagacaatattccgcca
tacgtggtgttcagtgacgccacgctgttggaaatggctgaactgttgccattgaccgcc
agtgagttgctggcggtcaatggcgttggtcagcggaaactggagcgatttggcgtcccc
tttatgacgctgattcgtgatcatctcgatagcggcgacgactga
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