Dickeya dadantii 3937: Dda3937_00221
Help
Entry
Dda3937_00221 CDS
T01305
Symbol
rpoC
Name
(GenBank) RNA polymerase, beta prime subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ddd
Dickeya dadantii 3937
Pathway
ddd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ddd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Dda3937_00221 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ddd03021
]
Dda3937_00221 (rpoC)
03400 DNA repair and recombination proteins [BR:
ddd03400
]
Dda3937_00221 (rpoC)
Enzymes [BR:
ddd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Dda3937_00221 (rpoC)
Transcription machinery [BR:
ddd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Dda3937_00221 (rpoC)
DNA repair and recombination proteins [BR:
ddd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Dda3937_00221 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
LPD39
Motif
Other DBs
NCBI-ProteinID:
ADM96439
UniProt:
E0SGF3
LinkDB
All DBs
Position
251342..255565
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEHQKNAQGEWTQKISLIDTTVGRAILWMIVPKGLPYSIVNQALGKKA
ISKMLNTCYRVLGLKPTVIFADQIMYTGFAYAARSGSSVGIDDMVIPAKKVEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTETVINRNGEEEKQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGTADILVPRNTLLNEKWCDLLEENSVDAVKVRSVVGCETDFGVCAKCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSLKL
TNAKFVKNVAGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMGKGDGSEVNGGDTVANW
DPHTMPVITEVGGSIRFTDMIDGQTITRQTDELTGLSSIVVLDSAERTGGGKDLRPALKI
VDANGDDVLIPGTDMPAQYFLPGKAIVQLEDGSQIGAGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGVVSFGKETKGKRRLVITPVDGSEPYEEMIPKWRQLNVFE
GERVERGDVISDGPESPHDILRLRGVHAVTRYIVNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVNPGSSEFLEGEQVEMSRIKIANRQLETDGKITATYSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRQAGEVPA
VAQVSADEASANLAELLNAGFGSSDDE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgcgctggcctcgccagacatgatccgttcctggtcttttggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaaccggaacgtgacggtttgttctgcgcccgt
atttttgggccggtaaaagactatgagtgcttgtgcggtaagtacaagcgcctgaaacac
cgtggcgtgatttgtgagaagtgcggcgttgaagtgacccagaccaaagtgcgccgtgag
cgcatgggccacatcgagctggcgtctccgaccgctcacatctggttcctgaaatccctg
ccgtcccgtatcggcctgctgctggatatgccgctgcgcgatatcgaacgcgtactgtac
ttcgaatcctatgtggtggttgaaggcgggatgaccaacctggagcgtcgtcagatcctg
actgaagagcagtatctggacgcactggaagagttcggtgacgaattcgacgccaagatg
ggggccgaagcgatccaggctctgctgaaaagcatggatctggagcaggaatgcgaacag
ctgcgcgaagagctgaacgaaaccaactccgaaaccaaacgtaagaagctgaccaagcgc
atcaagctgctggaagcgttcgtgcagtccggcaacaagccggagtggatgatcctgacc
gtgctgccggtgctgccgccggacctgcgtccgctggttccgctggacggcggtcgtttc
gctacgtcggatctgaacgatctgtaccgtcgcgtgatcaaccgtaacaaccgtttgaaa
cgcctgctggatctggctgcgccggacatcatcgtacgcaacgaaaaacgtatgctgcag
gaagcggtcgatgcgctgctggataacggccgtcgcggtcgtgcgatcaccggttccaac
aagcgtccgctgaaatctttggccgatatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctgggtaagcgcgtggactactccggtcgttccgtcattaccgtgggtccgtac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcgctggaactgttcaaaccgttc
atctacggcaagctggaactgcgtggtctggcgaccaccatcaaagccgccaagaaaatg
gtggaacgcgaagaagcggtggtatgggatatcctggatgaagtcatccgtgagcacccg
gtactgctgaaccgtgcgccgaccctgcaccgtctgggtattcaggcgttcgaaccggta
ctgatcgaaggtaaagccattcagctgcacccgctggtgtgtgcggcgtacaacgccgac
ttcgacggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgctgatgatgtccaccaacaacattctgtcgccggcgaacggtgagccgatcatc
gttccgtctcaggacgtggtgctgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgaccggtccgaaagaagcggagcgtatctatcgcgccggt
ctggcttcactgcacgctcgcgtgaaagtgcgtattaccgagcaccagaagaacgcgcag
ggcgagtggacgcagaaaatcagcctgatcgacactaccgtcggtcgtgcgattctgtgg
atgatcgtgccgaaaggtctgccttactccatcgtcaaccaggcgctgggtaagaaagcg
atctccaagatgctgaacacctgctatcgcgtgctgggtctgaagccgacggttattttt
gccgaccagattatgtacaccggttttgcttacgcggcgcgttccggttcttccgttggt
atcgacgatatggtcattccggcgaagaaagtggaaatcatcagcgaagcggaagccgaa
gttgccgagattcaggagcagttccagtctggtctggtaaccgcgggcgaacgttacaac
aaagtcatcgatatctgggccgcggcgaacgagcgtgtggccaaggcgatgatggaaaac
ctctctaccgaaacggtaatcaaccgtaacggcgaagaagagaaacaggtttcttttaac
agcatctttatgatggccgactccggtgcgcgtggttctgcggcacagattcgtcagctg
gcggggatgcgtggtctgatggcgaagccggacggctccatcatcgaaacgccgatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacgcacggtgcgcgt
aaaggtctggcggataccgcgttgaagacagcgaactccggttacctgactcgtcgtctg
gttgacgtggctcaggacctggtggtgaccgaggacgattgcggtacccacgaaggcatc
atgatgacgccggttatcgaaggcggcgacgtgaaagagccgctgcgtgagcgcgtactg
ggccgtgtaacggcggaagacgtgctgaaaccgggcaccgccgacattctggttccgcgc
aatacgctgctgaacgagaaatggtgtgacctgttggaagagaactcggtcgacgcggtg
aaagtgcgctccgtggtagggtgtgaaaccgacttcggcgtgtgcgccaagtgctacggt
cgcgacctggcgcgtggtcacatcatcaacaaaggtgaggccatcggggttatcgcggcg
caatccatcggtgaaccgggtactcagctgacgatgcgtacgttccacatcggtggtgcg
gcatcgcgtgcggcagccgagtccagcattcaggtgaaaaacaaaggtagcctgaaactg
accaacgccaagttcgttaagaacgtcgccggcaagctggtgatcacctcgcgtaacacc
gagctgaaactgatcgacgaattcggtcgtaccaaagaaagctataaagtgccttacggt
gcggttatgggtaaaggcgatggttccgaagttaacggtggcgataccgtagcgaactgg
gatccgcataccatgccggttatcaccgaagtgggcggtagcatccgtttcaccgacatg
atcgacggccagacgattactcgtcagaccgacgaactgaccggtctgtcctccatcgtg
gtgctggacagtgcggaacgtaccggtggcggtaaagacctgcgtccggcgctgaaaatc
gttgacgccaacggcgacgacgtactgattccgggcaccgacatgccggcacagtacttc
ctgccgggcaaagcgattgtccagttggaagacggttctcagatcggcgcgggtgatacc
ctggcgcgtattccgcaggaatccggcggtaccaaggatattaccggtggtctgccgcgc
gttgccgacctgttcgaagcccgtcgtccgaaagagccggcgattctggcggaaatcagc
ggcgtggtgtccttcggtaaagaaaccaaaggcaaacgtcgtctggtaatcacgccggtt
gatggcagcgaaccgtacgaagagatgattccgaagtggcgtcagctcaacgtgttcgaa
ggcgaacgtgtggaacgcggcgacgtgatttccgacggtccggaatctccgcatgacatc
ctgcgtctgcgcggcgtacacgcggtaacccgttacatcgtgaacgaagtgcaggaagtt
taccgactgcagggcgtgaagattaacgataaacacatcgaagttatcgttcgtcagatg
ctgcgtaaaggcaccatcgtcaatccgggcagctctgagttcctggaaggcgagcaggtg
gaaatgtcgcgcatcaagatcgccaatcgtcagttggaaacggacggcaagattacggca
acttacagccgcgacctgctgggtatcaccaaagcgtctctggctaccgagtccttcatc
tccgctgcgtcgttccaggaaacgacccgcgtgctgacggaagcggcggttgccggcaaa
cgcgatgagctgcgtggcctgaaagagaacgtcattgtgggtcgtctgatcccggccggt
accggctatgcgtaccatcaggatcgcatgcgccgtcgtcaggctggcgaagtcccggca
gtggctcaggtgagcgcggatgaagcatctgccaacctggctgaactgttgaacgccggc
tttggcagcagcgacgacgaataa
DBGET
integrated database retrieval system
