Dickeya dadantii 3937: Dda3937_00507
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Entry
Dda3937_00507 CDS
T01305
Symbol
hrp
Name
(GenBank) predicted ATP-dependent helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ddd
Dickeya dadantii 3937
Brite
KEGG Orthology (KO) [BR:
ddd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddd03019
]
Dda3937_00507 (hrp)
Enzymes [BR:
ddd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Dda3937_00507 (hrp)
Messenger RNA biogenesis [BR:
ddd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Dda3937_00507 (hrp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
CON_HrpB
DEAD
HA2_N
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ADM99611
UniProt:
E0SBK7
LinkDB
All DBs
Position
complement(3642948..3645455)
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AA seq
835 aa
AA seq
DB search
MLPDTAMITESCVSLPPVSAVLDDVIQALHTAPQVLLHAPTGAGKSTWLPLQLLQRSGFS
GRIIMLEPRRLAAKSVAFRLAEWLGETPGQTVGYRMRSESRVSSQTRLEVVTEGILTRML
QHDPALDGVSLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNSRLSSLL
PQSLSVSSQGRSWPVERHYQTVGSQERLEEAAARLIYRLLQEETGSLLVFLPGVAEIKRL
QTLLENAAPTAVDICPLYGALTLAEQQKAILPAAAGRRKVVLATNIAETSLTIEGIRVVV
DCGLERVALFDVKTGLTRLTTQRISQASMVQRAGRAGRLEPGVCWHLFAREQAERAAAQS
EPEILHSDLSGLRLDLLQWGCSDVAQLCWLDTPPQPALLAADRLLTQLGTCDAQQRLTAD
GRKMAALGSDPRLAAMLHAAGQDPDALATAALLAAIIEEPPRAGSPNLSDALHRPANHWQ
RRAQQLARRAGKTSGKVDAGKVNAGKVNESLAAWLLSAGFADRIARRRGQDGRYQLANGS
GASLPPEDALAASEWLLTPVLMQSPNSADARILLALPVDIDQLARQRPELVTEQNLMHWD
EEKGTLRASLRTQIGSLTLSSRPLAKPSDEALQQAMLNWLREQGLSVLNWDEPALQLRQR
LQCARQWLPEVAWPAVDDDALLASLELWLLPSLNGVRDRRTLNQINLSDALWRLLDWSQR
QRLDSALPSHYTVPGGSRLPIRYDADQPPVLAVRLQEMFGEHSSPLLAEGRVALVLELLS
PAMRPLQITRDLAAFWNGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTRKYQNT
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
gtgctgccggatacagccatgattacggagagttgtgtgagtctaccccccgtcagcgcc
gtactggatgacgtcatccaggcgttgcataccgcgccgcaggtgttgctgcatgccccg
accggtgccggaaagtccacctggttgccgttgcaactgttgcagcggagcggtttttcc
ggccgcattattatgctggagccgcgtcggctggcggccaaaagcgtggctttccggttg
gcggagtggctgggggaaacgccggggcagaccgtcggttaccgcatgcgttcggaaagc
cgggtcagcagccagacccggctggaagtggtgacggaaggcattttgacccgaatgctg
caacacgatccggcgctggacggcgtctcgctggtgatactggacgaattccacgaacgc
agtctgcaggccgatctggcactggcgctgctgctggatgtccagcaggggctgcgcgat
gacctgaagctgctgatcatgtccgccacgctggacaattcccggctctcttctttatta
ccgcaatcgctcagcgtgtcgtcgcaagggcgctcctggccggtggaacggcattaccag
acggttggctcgcaggagcggctggaggaggcggcggcccggcttatttatcgtttgttg
caggaggaaaccggctcgttgctggtgtttttgccgggcgtggcggaaatcaaacgcttg
cagacgctgctggaaaacgcggcgccgacggcggtggatatctgcccgctgtacggcgcg
ctgacgctggcggagcaacagaaagcgattctcccggctgccgccgggcggcgcaaagtg
gtgctggcgaccaacatcgccgaaaccagtctgaccatcgaaggcatccgagtggtggtg
gactgcggcctggaacgggtggcgctgtttgatgtcaaaaccgggctgactcgcctgacg
acgcagcgtatcagccaggcatcgatggtgcagcgcgccggacgcgccgggcggctggag
ccgggcgtgtgctggcatctgttcgcccgtgagcaggcggaacgcgccgcggcgcaaagc
gagccggaaatcctgcacagcgatctgtccgggctgcggctggatctgttgcaatggggc
tgcagcgacgtcgcgcagctctgttggctggataccccgccgcaacccgcgttgctggcg
gcggaccgtctgctgacgcaactgggtacgtgcgatgcgcagcaacggctgacggcggac
gggcgtaagatggcggcgttgggcagcgacccgcggctggcggcgatgctgcatgccgcc
gggcaggatccggatgcgctggcgacggcggcgttgctggcggcgatcatcgaagaaccg
ccgcgcgccgggtcgccgaatctgtccgacgcgctgcatcgtcccgccaatcactggcaa
cgccgggcgcaacagctggcgcgccgtgccggcaagacgtcaggcaaggtggatgcaggt
aaagtgaatgcgggcaaggtaaatgaaagcctggctgcatggttgttgtcggcgggattc
gcggatcgcatcgcccggcggcgtggtcaggatgggcgctatcaactggcgaacggctcc
ggagccagtctgccgccggaagacgcgctggcggcatcggaatggttgctgaccccggtt
ctgatgcaaagcccgaacagcgccgacgcccgtattttactggcgctgccggtggatatc
gatcaactggcgcggcagcggccggaactggtgacagaacagaatctgatgcactgggac
gaagaaaaaggtaccctgcgcgccagcctgcgaacgcagatcggcagcctgacgttatcg
tcccggccgttagccaagccgtcggacgaggcgttgcagcaggcgatgcttaactggttg
cgtgagcaagggctgtcggtgttgaactgggacgaaccggcgttgcaactgcgccagcgg
ttgcagtgcgcccggcagtggttgccggaggtcgcgtggccggcggtggatgacgatgcc
ctgctggcgtcgctggagctatggctgctgccgtcgctgaacggtgtgcgggatcgccgt
acgctcaatcagatcaacctgagcgacgcgctgtggcgtttgctcgactggtcgcaacgc
cagcgactggatagcgcgctgcccagccattacactgtgcccggcggcagccgcttgccg
atccggtatgatgccgaccagccgccggtgctggcggtgcggctgcaggagatgttcggt
gaacacagcagcccgctgctggcggaagggcgggtggcgctggtgctggaactgctgtct
ccggcgatgcggccgttgcagatcacccgcgatctggcggcgttctggaacggcgcctac
cgggaagtgcagaaagaaatgaaagggcgctatcccaagcacgtctggccggatgatccg
gcgaatacggcgccgacccggcgcaccagaaaataccagaatacctaa
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