Dickeya dadantii 3937: Dda3937_00661
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Entry
Dda3937_00661 CDS
T01305
Symbol
yhdA
Name
(GenBank) CsrB/C sRNA degradation factor
KO
K18765
RNase E specificity factor CsrD
Organism
ddd
Dickeya dadantii 3937
Brite
KEGG Orthology (KO) [BR:
ddd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddd03019
]
Dda3937_00661 (yhdA)
Messenger RNA biogenesis [BR:
ddd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Dda3937_00661 (yhdA)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
Cyt_bd_oxida_II
Motif
Other DBs
NCBI-ProteinID:
ADM96500
UniProt:
E0SHA1
LinkDB
All DBs
Position
317346..319292
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AA seq
648 aa
AA seq
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MGLTVRISILMTMLTTLAVVLMLVSSIFSFVCYSQQRMEHQLRAVAASIDQALLVQPPDS
IQFWLPAVMKAAGIVELEIRDGHESLYLLRLPEMLSDGADRALLYRHTRLSLLHHTDVKV
NVTYVDPLFGTPRYLKSTLSIVLVILVIAVTVFHGVRWLRRQMAGQEQLERRARRILAGE
RDTVMHGSVHEWPATASGALDQLLLDLAEAREARSRVDTLIRSFAAQDAQTGLNNRLFFE
NQLATQLEDPEDVGTHGVVMMIRLPDFDTLQETHGYGGVLEEYRNTLINLLSTFVLRYPA
ALLARYYHSDFTVLLPHRTLKEADSIASQLVKAIDILPVTPLIDREDILHIGISAYHGGQ
TTEQVMESVEDATRNAVLQGGNGWCVYDRRVPEKGRGSVKWRTLLEHTLLRGGPRLYQKP
AITRDGEVHHREMFSRIYDGTQELLEAEYMPLVRQLGLTSGYDRQLINRVIALTVSWQDS
VLAFPITVDSLLQRPFLRWLRETLLQCPKRQRERLLFELAEADVCQYIGRLRPILAMITG
LGCRLAVTQAGLTLVSTAYIKSLQVEVIKLHPGLVRSLDKRPENQLFVSSLTEACKGTHA
QVFAAGVRTREEWQTLLDKGVCGGQGDLFAASEPVSNTLKKYSPRTYV
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atggggttgactgtcagaatatcgatattaatgacgatgctaacgacattggccgtggtg
ctaatgttggtcagcagcattttcagttttgtgtgttatagccaacagcgtatggaacat
cagctcagggcggtggcggccagtatcgaccaggcattgctggtgcagccgcccgacagt
atccaattctggttgccggcggtgatgaaagcggccggcatcgtggaactggagattcgc
gacggccatgaaagcctctatttattacgtttgccggaaatgttgtctgacggcgcggat
cgggcgctgctctatcgtcacacccgcttatcgttgttgcaccacaccgatgtgaaggtg
aacgtgacctacgtcgatccgctgttcggcacgccgcgttatctcaaatccactttgtcc
atcgtgctggtgatactggtgatcgcggtgaccgtgtttcatggcgtgcgctggctgcgg
cgtcagatggccggacaggagcaactggagaggcgcgcccggcggattttggcgggcgag
cgcgacaccgtgatgcatggctcggtgcatgagtggccggcgacggccagcggcgcgctg
gaccaactgctgctggatctggcggaggcgcgcgaggcgcgcagccgggtcgatactctg
atccgctcgttcgcggcgcaggatgcgcaaaccggtctgaataaccggctgttttttgaa
aatcagctcgccacgcaactggaagacccggaagacgtcggcacgcatggcgtggtgatg
atgatccgtctgccggactttgacaccctgcaggaaacgcacggctatggcggcgtgctc
gaagagtatcgcaataccctgatcaacctgctgtccacgtttgttctacgctatcccgcc
gcgctgctggcgcgttactaccacagcgattttacggtgctgttgccgcatcgcaccctg
aaagaagcggacagcatcgccagccaactggtgaaagcgatcgatattctgccggttacg
ccgctgatcgatcgggaagacattttgcacatcggcatcagcgcctatcacggcgggcag
accaccgaacaggtgatggaaagcgtggaagacgccacccgcaacgcggtattgcagggc
ggcaacggctggtgcgtttatgaccggcgggtgccggaaaaaggccgcggcagcgtgaag
tggcgcaccctgctggaacataccctgttgcgcggcgggccgcgtctgtatcagaaaccg
gcgattacccgcgacggcgaggtgcatcaccgggaaatgtttagcagaatttatgatggc
acccaggaattgctggaggcggagtacatgccgctggtgcgtcagctcggcctgacctcc
ggttatgaccggcaactgatcaaccgggtaattgccctgacggttagctggcaggattcg
gtactggcgttcccgattacggtggattcgctgctgcagcggccgttcctgcgctggctg
cgcgaaacgttgctccagtgtccgaaaaggcagcgcgagcgattattgtttgaacttgcg
gaagcggatgtgtgtcaatatatcggccgtttgcgaccgatacttgccatgataaccggc
ctgggctgccggctggcggtgacgcaggccgggctgacgctggtcagcaccgcctatatc
aagtcgctgcaggtggaggtgatcaaactgcatccggggctggtgcgcagcctggataag
cgaccggagaatcagctgtttgtcagcagcctgaccgaagcctgcaagggaacgcatgct
caggtgttcgccgccggcgtgcgtacgcgtgaagagtggcagacgttgctggataaaggc
gtttgcggcggtcagggcgatctgttcgccgcttccgagccggtgagcaacacgctgaaa
aaatattcaccacgcacgtatgtttga
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