Dickeya dadantii 3937: Dda3937_01891
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Entry
Dda3937_01891 CDS
T01305
Symbol
dnaE
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ddd
Dickeya dadantii 3937
Pathway
ddd03030
DNA replication
ddd03430
Mismatch repair
ddd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ddd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Dda3937_01891 (dnaE)
03430 Mismatch repair
Dda3937_01891 (dnaE)
03440 Homologous recombination
Dda3937_01891 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ddd03032
]
Dda3937_01891 (dnaE)
03400 DNA repair and recombination proteins [BR:
ddd03400
]
Dda3937_01891 (dnaE)
Enzymes [BR:
ddd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Dda3937_01891 (dnaE)
DNA replication proteins [BR:
ddd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Dda3937_01891 (dnaE)
DNA repair and recombination proteins [BR:
ddd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Dda3937_01891 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
MutS_II
Motif
Other DBs
NCBI-ProteinID:
ADM97294
UniProt:
E0SCE4
LinkDB
All DBs
Position
1157231..1160713
Genome browser
AA seq
1160 aa
AA seq
DB search
MAEPRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHGA
GIKPIIGADFYLQSEELGDELAHLTILAMNNEGYQNLTLLISRAYQRGYGADGPTIDRAW
LVEHQAGLLLLSGGRHGDIGKFLLRGNQVLVEQSVAFYQQHFPQRFYLELVRTGRPDEES
YLHAAVELATAHGLPVVATNDVCFISQDDFEAHEIRVAIHDGFTLDDPKRPKNYSVQQYM
RSEEEMCELFADIPEALINTVEIAKRCNVTIRLGEYFLPQFPTGDMSTEDYLVMCSKKGL
EERLTFLFPDEEVRAQRRPEYDERLEIELNVINQMGFPGYFLIVMEFIQWSKDNDVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIDHVAD
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFAAEPQ
LGEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDPEGNHPVTQ
FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKQELEPIDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDIEWQHETLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEM
AKQRSVFKEGAETMGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTDKIVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG
VGEGPIEAIIEARNNDGYFRDLFDLCARTDIKKLNRRVLEKLIMSGAFDRLGPHRAALMN
SLADAMKSAEQHAKAEAIGQADMFGVLAETPEQVEQSYSTVPPWPEQVVLDGERETLGLY
LTGHPINQYLKEIERYAGGVRLKDMHPTERGKMTTAVGLVLAARVMVTKRGNRIGVCTLD
DRSGRLEVMLFTDALDKYQHLLEQDRILIASGQVSFDDFSGGLKMTVRELMDISEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRQDARARLRFGAAWRITPTD
GLLNDLRTLVGNEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggccgaaccacgttttgttcacctgcgtgttcacagtgactattccatgatcgatggg
ctggcgaaaaccggcccgttggtaaaaaaagcggctgcgctgggcatgccggcgctggcg
atcaccgactttaccaacctgtgcgggctggtgaaattctatggcggcgcgcatggcgcc
ggcatcaagccgatcatcggcgcggatttttatctgcagagtgaagagctaggcgacgaa
ctggcgcacctcaccattctggcgatgaacaatgaaggttatcagaacctgacgctgctg
atttcccgcgcctatcagcgcgggtacggcgccgacgggccgacgattgatcgggcatgg
ctggtagaacatcaggctggattgctgctgttgtccggcgggcgtcatggcgacatcggc
aagtttctgctgcgcggcaatcaggtgctggtggaacaaagcgtcgccttttatcaacag
cattttccgcagcggttttatctggagctggttcgcaccggtaggccggatgaggaaagc
tacctgcatgcagcggtagagctggcgaccgcgcacggcttaccggtcgtcgccaccaac
gatgtctgctttatcagtcaggatgacttcgaggcccatgagatccgcgtggcgattcat
gacggcttcacgctggacgacccgaaacgccccaaaaattatagcgtgcagcagtacatg
cgcagcgaggaggagatgtgcgagctgttcgccgatatccccgaagcgctcatcaacacg
gtggagatcgccaaacgctgtaacgtcactatccggctcggcgagtatttcctgccgcaa
ttcccgaccggcgacatgtcgaccgaagactatttggtgatgtgctctaaaaaagggctg
gaagaacgtctgacgttcctgttcccggatgaggaggttcgcgctcagcgccgcccggaa
tacgacgaacgtctggaaattgaactcaacgtcatcaaccagatgggctttcccggctac
ttcctgatcgtaatggagtttatccagtggtcgaaggacaacgacgtgccggtagggccg
gggcgaggctccggcgccggctcgctggtggcgtatgcgctgaagatcaccgatctggat
ccgctggaattcgacctgctgttcgaacgtttccttaacccggaacgtgtgtcgatgcct
gactttgacgtcgacttttgcatggaaaaacgcgatctggtgattgatcacgtggcggac
atgtacggccgcgacgcggtgtcgcaaatcatcaccttcggcaccatggcggccaaagcg
gttattcgcgacgtcggtcgggtgctggggcatccgtacggctttgtcgaccgcatttcc
aaactggtgccgcccgacccgggcatgacgttggagaaagccttcgccgccgagccgcag
ctgggcgaaatttacgaagcggatgaagaggttaaggcgctgatcgacatggcgcgcaaa
ctggaaggggtgacccgcaacgccggcaagcacgccgggggcgtagtgatttcgccgacc
aaaattaccgactttgcgccgctgtactgcgacccggaaggcaatcacccggtcacccag
ttcgacaagagcgacgtggaatacgccggtctggtgaaattcgacttcctcggcctgcgc
acgttgaccatcatcaactgggcgttggagatgatcaacgcccggcgcgctaagcaggag
ctggagccgatagacattgcggccatcccgctggacgacaagaaaagcttcgatatgctg
cagcgctcggaaaccacggcggtgttccagcttgaatcgcgcggcatgaaagacctgatc
aaacgccttaagccggactgttttgaggatatgatcgcgctggtggctctgttccgtccg
gggccgctgcagtcaggcatggtggataacttcatcgaccgtaagcacgggcgcgaagcg
atttcctacccggatatcgagtggcagcatgagacgctgaagccggtgctggagccgacc
tatggtatcatcctgtatcaggaacaggtgatgcagattgcccaggtgctggcggggtat
accctcggcggcgcggatatgctgcgccgtgcgatgggtaagaaaaaacccgaagagatg
gccaagcagcgctcggtgtttaaagagggcgcggaaacgatgggcgtcgacggcgagctg
tcgatgaaaatcttcgacctggtggagaaattcgccggttacggcttcaacaagtcgcat
tcggccgcctacgcgctggtatcgtatcagacgctgtggctgaaggctcattatccggcg
gagttcatggcggcggtaatgaccgcggatatggacaacaccgacaagatcgtcgggctg
gtggacgaatgctggcgcatggggctgaagatcctgccgccggatatcaatagcggttta
taccatttccacgtcaacgatgacggcgagatcgtctacggcatcggcgccatcaaaggc
gtgggggaagggccgatcgaggccatcatcgaagcgcgtaataacgatggctatttccgt
gatttgtttgatctgtgcgcccgtaccgatatcaagaaactgaaccggcgggtgctggaa
aaactgatcatgtccggcgcattcgaccggctggggccgcatcgggcggcgctgatgaat
tcgctggcggacgccatgaagtcggcggaacagcacgcgaaggcagaggccatcggtcag
gcggatatgttcggggtgctggcggaaacgcctgaacaggtggagcagtcctacagcacg
gtgccgccgtggccggaacaggtagtgctggacggcgaaagggaaacgctgggcttgtac
ttaaccgggcatcccatcaaccagtatctgaaggaaattgaacgctatgcgggaggcgtg
cgtttaaaagacatgcatcccacggagcggggaaaaatgaccactgccgtcgggctggtg
cttgccgcccgggtgatggtgaccaaacggggcaaccgtattggcgtctgcacgctggat
gatcgttctggtcgtctggaagtcatgctgtttaccgacgcgctggacaaatatcagcac
ctgctggagcaggatcgtattttgattgccagcggacaggtcagctttgatgacttcagc
ggcggacttaaaatgacggtcagagagctaatggatatcagcgaagcgcgggaaaaatac
gcgcgcgggcttgctatctcgctgactgacaggcaaattgatgaccagttgttaaaccgt
ctccgtcagtcgttggaaccccatcgatcggggacgattccggtgcatctctactaccag
cgccaggatgcgcgtgctcggctacgtttcggtgcggcatggcgtatcacgcccaccgat
gggttgctgaatgatttacgtaccctggttggtaatgaacaggtagaactggaatttgac
taa
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