Dickeya dadantii 3937: Dda3937_02335
Help
Entry
Dda3937_02335 CDS
T01305
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ddd
Dickeya dadantii 3937
Pathway
ddd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ddd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dda3937_02335 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddd03019
]
Dda3937_02335 (deaD)
03009 Ribosome biogenesis [BR:
ddd03009
]
Dda3937_02335 (deaD)
Enzymes [BR:
ddd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Dda3937_02335 (deaD)
Messenger RNA biogenesis [BR:
ddd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Dda3937_02335 (deaD)
Ribosome biogenesis [BR:
ddd03009
]
Prokaryotic type
rRNA helicases
Dda3937_02335 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
ADM96850
UniProt:
E0SKY7
LinkDB
All DBs
Position
683817..685712
Genome browser
AA seq
631 aa
AA seq
DB search
MAEFETSFASLGLSAPILNALSEMGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
SLPLLNNIKADLKAPQLLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAE
HQTALFSATMPEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALIRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVDLPNAELLGQRRLAQFAGKVQQQLESSDLDMYRALLSKLQPQQEELDIE
TLAAALLKMAQGERPLILPPDPVVERRPRREFRERDERFERRGDRNDRGDRNDRAPRGDD
RPARRERRDVGEMDLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIEL
PKGMPGDLLSHFTRTRILNKPMNMQLMGDAQPHERRERREGADRGDRGARGFSERPAGNG
RGRPFNGERREGGERRGSRDGQRAPRRFSNA
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atggcagagtttgaaacctcttttgctagtctggggctgtccgctccgattctgaatgca
ctgtctgagatggggtacgaaaagccgtccccgattcaggcggaatgtattcctcatctg
ctcaacgggcgcgacgtactgggtatggcgcagaccgggagcggcaagaccgcggcattt
tccctgccgctgctgaacaatatcaaggctgacctgaaagcgccgcagttgctggtgctg
gcaccgacccgcgaactggcggtgcaggttgcggaagcctgtaacgaattttccaaacac
atgcagggcgtcaacgtggtggcgctgtacggcggccagcgttatgacgtgcaactgcgc
gcgctgcgccagggaccgcaaatcgtggtcggtaccccggggcgtctgctggaccacctg
aaacgcggtacgctggatctgtccaacctgagcggtctggtactggacgaagctgacgaa
atgctgcgcatgggcttcattgaagatgtggaaaacatcatggcgcagatcccggctgaa
catcagacggcgctgttctccgccaccatgccggaagcgattcgtcgtatcacccgtcgt
ttcatgaacgatccgcaggaagtccgcattcagtccagcgtgacgactcgtccggatatc
agccagagctactggacggtatacggcatgcgtaagaatgaagcgctgatccgtttcctg
gaagcggaagattttgatgcggcgatcattttcgtgcgcaccaagaacgccacgctggaa
gtggccgaagcgctggagcgcagcggttacaacagcgccgcgctgaacggcgatatgaat
caggcgctgcgtgaacaaacgctggaacgtctgaaagacggtcgtctggatatcctgatc
gcgaccgacgttgccgcgcgtggtctggatgttgagcgtatcagcctggtggtgaactac
gatatcccgatggattccgagtcctacgtacaccgtatcggtcgtaccggtcgtgccggt
cgtgccggacgtgcgttgctgttcgtggaaaaccgcgagcgtcgcctgctgcgtaatatc
gaacgcaccatgaagctgacgattccggaagtggatctgccgaacgccgaactgctgggg
cagcgtcgtctggcgcagtttgccggcaaagtacagcagcagctggaaagcagcgatctg
gatatgtatcgtgcgctgctcagcaagctgcagccgcagcaagaagagctggacatcgaa
acgctggctgccgcgctgctgaaaatggcgcagggcgaacgtccgctgattctgccgccg
gatccggtggttgaacgtcgtccgcgtcgtgaattccgcgaacgcgatgagcgctttgag
cgtcgtggtgaccgtaatgatcgtggcgaccgtaacgatcgtgctccgcgtggcgatgat
cgtccggctcgtcgtgagcgtcgtgacgtcggcgaaatggatctgtaccggatcgaagtg
ggtcgtgacgatggcgtagaagtgcgtcatatcgtgggcgcgatcgctaacgaaggcgac
atcagcagccgttacatcggcaacatcaaactgtttgcctcgcactccaccattgagctg
ccgaaaggcatgccgggcgacctgctgtctcacttcacccgtacgcgtattctgaacaag
ccgatgaatatgcaactgatgggtgacgcacagccgcatgaacgccgtgagcgtcgtgaa
ggcgctgatcgtggcgaccgtggtgcccgcgggtttagcgaacgccccgctggtaatggc
cgtggacgtccgttcaatggcgaacgtcgtgaaggtggcgagcgccgtggcagccgtgac
ggtcagcgcgcgccgcgccgtttcagcaatgcctga
DBGET
integrated database retrieval system
