Dickeya dadantii 3937: Dda3937_02337
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Entry
Dda3937_02337 CDS
T01305
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ddd
Dickeya dadantii 3937
Pathway
ddd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ddd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dda3937_02337 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddd03019
]
Dda3937_02337 (pnp)
03016 Transfer RNA biogenesis [BR:
ddd03016
]
Dda3937_02337 (pnp)
Enzymes [BR:
ddd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Dda3937_02337 (pnp)
Messenger RNA biogenesis [BR:
ddd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Dda3937_02337 (pnp)
Transfer RNA biogenesis [BR:
ddd03016
]
Prokaryotic type
tRNA degradation factors
Dda3937_02337 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_2
KH_2
OB_RRP5_4th
aRib
S1_RRP5
KH-I_KHDC4-BBP
KH_SLS1_2
DUF4172
Motif
Other DBs
NCBI-ProteinID:
ADM96848
UniProt:
E0SKY5
LinkDB
All DBs
Position
680504..682624
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AA seq
706 aa
AA seq
DB search
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKHAKPGQDFFPLT
VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDGFVNEVQVIATVVSV
NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTEELKTSRLDLVVA
GTEGAVLMVESEADLLSEDQMLGAVVFGHDQQQIVIENIKSLTAEAGKPKWNWQAPEINV
ELHDRVKALSEARLGDAYRITEKQERYAQVDTIKSDVVAALLAEDDTLDENELRDILGSI
EKNVVRSRVLSGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTER
DAQIIDELIGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKPEA
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD
ILGDEDHLGDMDFKVAGSREGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA
ISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAST
DGEKAKYAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATSQSQETVQVSEEE
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
ttgctgaatccgatcgttcgtaaattccagtacggtcagcataccgtgacactggaaacc
ggtatgatggctcgtcaggctaccgctgccgtaatggtcagcatggatgacaccgcggta
ttcgtaaccgtggttggcgccaaacacgccaaaccgggccaggactttttcccgctgacc
gttaactatcaggagcgtacctacgctgctggccgtatccccggcagttttttccgtcgt
gaaggccgtccgagcgaaggcgaaacgctgacctcccgtctgatcgaccgtccgattcgt
ccgctgttcccggatggtttcgttaatgaagtgcaggttatcgccaccgtggtttccgtt
aatccgcaggttaacccggatatcgtcgccatgatcggtgcttccgctgcgttgagcctg
tccggtattccgttcaacggcccgattggcgcggctcgcgttggttacatcaacgaccag
tatgtgctgaacccgactaccgaagagctgaaaaccagccgtctggatctggtggttgcc
ggtactgaaggcgcggtgctgatggtggaatccgaagcggatctgctgagcgaagatcag
atgctgggcgcggtagtgttcggccacgaccagcagcagattgttatcgaaaacatcaag
tcgctgacggcggaagccggcaagccgaagtggaactggcaggcgccggaaattaacgtc
gaactgcacgaccgtgtgaaagcgctgtctgaagcccgtctgggcgatgcctatcgcatc
accgaaaaacaggagcgctacgctcaggttgataccatcaaatccgacgtggttgcggct
ctgctggcggaagatgacacgctggacgagaacgaactgcgcgatattctcggcagcatc
gagaaaaatgtggtgcgtagccgtgtactgagcggcgaaccgcgtatcgacggccgtgaa
aaagacatgatccgtggtctggacgttcgtaccggcgtgctgccgcgtacccacggttcc
gcactgttcacccgtggcgaaactcaggcgctggttaccgcaacgctgggtaccgagcgt
gacgcgcagattattgacgaactgatcggcgaacgtaccgatcgcttcctgctgcactac
aacttcccgccgtactccgtgggtgaaaccggtatggtcgggtcgccgaaacgccgtgaa
atcggtcacggtcgtctggctaaacgtggtgtgttggctgtgatgccgaaaccggaagct
ttcccgtacactgtacgtgtggtatctgaaatcactgagtccaacggttcttcttccatg
gcgtccgtgtgcggtgcgtcgctggcgctgatggatgccggcgtgccgatcaaagctgcc
gttgccggtatcgcgatgggcctggtaaaagaaggcgacaactacgttgtgctgtcagac
atcctgggtgacgaagaccatctgggcgacatggatttcaaagtggccggtagccgtgaa
ggcgtgaccgcgctgcagatggacatcaaaatcgaaggtatcacccgcgaaatcatgcag
gtggcgctgaatcaggctaagggtgcgcgtctgcacattctgggcgtgatggaacaggcc
attagcacgccgcgtggcgatatctctgagtttgcgccgcgtattcacaccatcaagatc
agcaccgacaagatcaaggatgtgattggtaaaggcggttcggtgatccgtgcgctgacc
gaagaaaccggcaccaccatcgagatcgaagacgacggtacggtgaaaatcgcatcgacc
gacggcgaaaaagcgaaatatgctattcgtcgtatcgaagagatcaccgctgaaatcgaa
gttggccgtatctatcagggcaaagtgacccgcatcgttgactttggcgcctttgtggcc
atcggcggcggtaaagaaggtctggtacatatttctcagatcgccgacaagcgtgttgag
aaagtgaccgactatctgcagatgggccaggaagtaccggtcaaggtactggaagtggac
cgtcagggtcgtatccgtttgagcataaaagaagcaacttctcaatctcaggaaactgtt
caggtttccgaggaagaataa
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