Dickeya dadantii 3937: Dda3937_03731
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Entry
Dda3937_03731 CDS
T01305
Symbol
sbcB
Name
(GenBank) exonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
ddd
Dickeya dadantii 3937
Pathway
ddd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ddd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
Dda3937_03731 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ddd03400
]
Dda3937_03731 (sbcB)
Enzymes [BR:
ddd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
Dda3937_03731 (sbcB)
DNA repair and recombination proteins [BR:
ddd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
Dda3937_03731 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Dda3937_03731 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Dda3937_03731 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Phage_N_antitermin
Motif
Other DBs
NCBI-ProteinID:
ADM98291
UniProt:
E0SAR0
LinkDB
All DBs
Position
complement(2216104..2217534)
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AA seq
476 aa
AA seq
DB search
MQNQHTEPTFFIHDYETFGKHPAKDRPAQFAGVRTDLNFNVIGEPVVIYCQPTDDYLPDP
EAVMITGITPQVAQSRGTREAEFARHIHEAFSAPGTCIMGYNNIRFDDEVSRNLFYRNFY
DPYAYSWQNGNSRWDLLDMLRACYALRPDGIVWPENDDGFPSFRLEHLTRANGVEHTQAH
DAMSDVYATIAMARLLKQSQPKLFDYLYALRNKNKVSALIDIPQMKPLVHVSGMFGAARG
NTSWIVPLAWHPDNRNAVIVCDLAGDIQPLLELDADELRTRLYTRRALLAEDESPVPIKL
VHINKCPVLAPASTLRPEDAERLGIDRQRCLNNLQLLRQHGSVREKVVALFADAPPFEVS
TDVDLQLYDGFFSDADRAAMDIIRKTDSQHLPALNLQFADRRVEELLFRYRARNFPGTLD
EQEQQRWLAHRRAVFTTDRVQDYFDALNQLYQQHDGDEKKTALLKALFAYAQQLLT
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
gtgcaaaatcaacacaccgaacccacttttttcatccatgactatgagacctttggcaag
catccggccaaagatcgtccggcgcagttcgccggcgtccgcaccgatttaaattttaat
gtgattggcgagccggtggtgatctactgccagccaaccgacgattacctgcccgacccg
gaagcggtgatgattaccggtatcacgccgcaggtggcgcaaagccgagggacgcgcgaa
gcggagttcgcccgtcatatccatgaagcgttcagcgcgccgggcacctgcatcatgggg
tacaacaacattcggttcgatgacgaagtcagccggaacctgttctatcgcaacttctac
gatccttacgcctacagctggcaaaacggcaactctcgctgggatttactggacatgctg
cgagcgtgctatgccttgcgcccggacggcattgtctggccggaaaacgacgacggtttt
cccagtttcaggctggaacatctgacacgcgccaatggcgtcgaacatactcaggcacac
gatgccatgtcggatgtgtatgccaccatcgccatggcgcgcctgctcaaacagtcgcag
ccaaaactgttcgactatctctatgcgttgcgtaacaagaataaagtcagcgcgttaatc
gatattccgcagatgaagccactggtacacgtttccggcatgtttggcgccgcgcgcggt
aatactagctggatcgtgccgctggcctggcacccggataaccgcaacgcggtcatcgtc
tgcgatctggcgggcgatattcagccgttgctggagctggatgcggatgaactgcgcacc
cggctttatacccgccgtgctctgctggcggaagatgaatcgccggtgccgatcaaactg
gttcatataaacaagtgtccggttctggcgccggccagcacgctgcgaccggaagacgca
gagcggctgggtattgaccgtcagcgctgcctgaacaatctgcaattgctgcgtcagcat
ggcagcgtgcgagagaaagtggtggcgctgtttgccgatgccccgccctttgaagtgtca
acggatgtggacttgcagttgtacgacggctttttcagcgacgccgatcgcgccgcgatg
gacatcatccgtaaaaccgactcccagcatcttccagctctcaatcttcagtttgccgat
cgccgggtggaagaattgctgttccgctaccgggcgcgcaattttcccggcacgcttgat
gagcaggaacaacagcgctggctggcgcatcgtcgggccgtgtttaccaccgaccgggtg
caagattactttgatgccttgaatcagctctaccaacagcacgatggcgacgaaaagaaa
acggcgttgctgaaagcgctgtttgcctatgctcagcaactgctgacttga
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