Dickeya dadantii 3937: Dda3937_04705 Help Entry Dda3937_04705     CDS       T01305                                  Name (GenBank) ATP-dependent helicase hrpA   KO K03578   ATP-dependent RNA helicase HrpA [EC:5.6.2.6] Organism ddd  Dickeya dadantii 3937 Brite KEGG Orthology (KO) [BR:ddd00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:ddd03019]     Dda3937_04705 Enzymes [BR:ddd01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      Dda3937_04705 Messenger RNA biogenesis [BR:ddd03019]  Prokaryotic type   Bacterial mRNA degradation factors    Other RNA degradation factors     Others      Dda3937_04705 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DUF3418 APHB_HrpA OB_NTP_bind Helicase_C HA2_C DEAD AAA_19 WHD_HA2 AAA_22 T2SSE nSTAND3 NACHT nSTAND_NTPase5 PhoH DUF6145 AAA_25 FtsK_SpoIIIE CHASE3 Motif Other DBs NCBI-ProteinID:  ADM98813 UniProt:  E0SF71 LinkDB All DBs Position complement(2787406..2791293) Genome browser AA seq 1295 aa AA seqDB search MTSPLHALEPQLNVLMLRDRQRLRRRLQGAMKVGNPQAQVSIAQEIGQEIEAARLRVEQR RASLPAIRYPEALPVSQKREAILSAIRDHQVVIVAGETGSGKTTQLPKMCLELGRGVTGL IGHTQPRRLAARSVADRIAAELETPLGSTVGYKVRFNDQVGDNTLVKLMTDGILLAEIQQ DRLLMQYDTLIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPQRFSRHFSNA PIIEVSGRTYPVDVRYRPVVEDAQDSDRDQLQAILDAVDELCREGPGDILVFMSGEREIR DTADALNKQDLPHTEILPLYARLSNQEQNRVFQSHHGRRIVLATNVAETSLTVPGIRYVI DPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVAAGICIRLYSEQDFLSRPPFT DPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELSALQSSEDGHYR LTPQGRQLAQLPIDPRLARMVLEARQTSCVREVMVITAALSIQDPRERPVEKKQAAEEKH RRFADKESDFLAFVNLWDYLQEQQKALSSSQFRKLCRSDYLNYLRVREWQDIYTQLRQVV KELGFPVNSEPADYRSLHGALLTGLLSHIGQKDVEKQEFSGARNTRFAIFPGSGLFKKPP KWTIVAELVETSRLWGRIAARIEPEWVEPLAQHLIKRSYSEPHWEKAQGAVMAQEKVTLY GLPLVAARKVNYGATDPVVSRELFIRHALVEGDWQTQHAFFRANQKLRSEVEELENKSRR RDILVDDETLFAFYDQRLPHDVVSSRHFDNWWKQASKTDSDQLNFEKAMLIKDGAERVSA LDYPNHWQQGELRLRLTYQFEPGADADGVTVHIPLPVLNQVKEDGFEWQIPGLRSEVVVA LIKSLPKPIRRNFVPAPNYAEAFLARVTPLEKGLLDALERELRLMTGVTVDREAWQWEQV PDHLKMTFRVVDEKSRALREGKSLRALKDQLQEKVQQTLSAVADDGIEQRDLHIWSFGDL PERYEQKRGGYAVKAYPALVDEKDSVAIRLFDTPHQQQQMMWRGQRRLLLLNIPSPIKYL HEKLPNKAKLGLYFNPYGKVLELIDDCIACGVDQLMTVAGGPVWQEDAFRQLHERVRAEL NDTVVDIARQVEQILTTVFNINKRLKGRVDMALALALSDIKSQMSGLVFRGFVTDNGWKR LPDVLRYLQAIERRLDKLAQDVHRDRAQMLKVEQVQQAWQQWLNKLPPERREDDDVKAIR WMIEELRVSYFAQQLGTPYPVSDKRILQAMAQIEG NT seq 3888 nt NT seq  +upstreamnt  +downstreamnt gtgacatcacccctccatgcgttagaacctcagctcaatgtgctaatgctgcgcgaccgg caacgcctgcgccgccgtctgcaaggcgcgatgaaagtgggaaatccacaggcacaggtt tcgattgcgcaggaaatcggccaggagatcgaggccgcgcgcctgcgagtggagcagcgc agggcgtcgttgccggcgatacgttacccggaagcattgccggtcagccagaaacgcgag gcgatcctcagcgccattcgcgatcatcaggtggtgatcgtggccggggaaaccggctcg ggcaaaaccacccagttgccgaagatgtgtctggagctggggcgcggcgtcaccgggttg atcggccatactcaaccgcgccggctggcggcccgcagcgtggcggatcgcatcgcggcg gagctggagacgccgctggggagcacggtgggttacaaggtgcgatttaacgatcaggtc ggcgacaacacgctggtcaaactgatgacggacggtattctgctggcggagattcagcag gaccggctgttgatgcagtacgacacgctgatcatcgacgaggcgcacgaacgcagtctc aacatcgactttattctcggctacctcaaacagctattgcccagacggccggacctcaag gtcatcattacctcggctaccatcgatccgcagcgtttttcacggcactttagcaacgcg ccgatcatcgaagtctctgggcgaacctatccggtggatgtccgttaccggccggtggtg gaagacgcgcaggacagcgaccgcgaccagttgcaggcgattctggatgcggtggatgaa ctctgtcgcgaagggccgggcgatattctggtattcatgagcggcgagcgggaaatccgc gataccgccgacgcgctgaataaacaggatttgccgcataccgagattttgccgctgtac gcgcggctctccaatcaggaacagaaccgggtgttccagtctcatcacgggcggcgcatc gtgctggcgaccaacgtagcggaaacctcgctgacggtgccgggcattcgttacgtgatt gaccccggtaccgcgcgcatcagccgctacagctaccgcaccaaggtgcagcggctgccg atcgagccggtgtcgcaggcttccgccaaccagcgcaaagggcgttgcggccgtgtggcg gcaggcatctgcatccggctctattccgagcaggattttctctcccgaccgccgtttacc gacccggagattttgcgcaccaacctggcgtcggtcattttgcagatgacggcgttgggg ctgggcgatatcgcggcgtttccgtttgttgaagcgccggacaagcgcaatattcaggat ggggtgcggctgctggaagagctgagcgcgctccagagcagcgaggacggtcattaccgg ttgacgccgcaggggcgccaactggcgcagttgcctatcgacccgcggctggcgcgcatg gtgctggaagcgcgccagaccagctgcgtgcgcgaggtgatggtcatcaccgcggcgttg tcgattcaagacccacgcgagcgcccggtagagaaaaagcaggcggcggaggagaaacac cgtcgtttcgccgataaagagtccgatttcctggccttcgtcaacctgtgggattacctg caagagcagcagaaagcgctgtcgtccagccagtttcgcaaactgtgccgcagcgattac ctcaactatctgcgggtacgggaatggcaggatatctacacccaactgcgtcaggtggta aaggaactgggcttcccggtcaacagcgaaccggcggattaccgtagcctgcacggcgcg ttactgaccgggctgctgtcccacatcgggcaaaaagatgttgagaaacaggaattcagc ggcgcgcgcaacacccgtttcgccattttccccggctcggggctgttcaaaaagccgccg aagtggaccatcgtagcggaactggtggaaaccagccgcctgtgggggcgcatcgccgcc cgcatcgaaccggaatgggttgaaccgctggcgcagcatctgatcaaacgcagctacagc gagccgcactgggagaaagcgcagggtgcggtgatggcgcaggaaaaggtcacgctgtac ggtctgccgctggtggcggcccgcaaggtgaactacggcgccaccgacccggtggtgtcg cgcgagctgttcattcgccatgcgctggtggaaggcgactggcagacccagcacgcattt ttccgcgccaatcagaaactgcgatcggaagtggaggaactggagaacaagtcccgtcgt cgcgacattctggtggatgacgagacgctgtttgcgttctacgaccagcgccttccccat gacgtggtgtcgagccgtcatttcgacaactggtggaaacaggcgtcgaaaaccgactcg gatcagctgaacttcgagaaggcaatgctgatcaaagacggggcggagcgcgtcagcgcg ttggattatccgaaccactggcagcagggcgagctgcgtttgcgtctcacctatcagttc gagccgggggcggacgccgacggcgtcaccgtgcatattccgctgccggtgttgaatcag gtaaaagaggacggattcgaatggcagatcccaggactgcgcagtgaggtggtggtggcg ctgatcaaatcgctgcccaaaccgatacggcgcaacttcgtgccggcgcccaactatgcc gaagcctttctggcgcgggtgacgccgctggagaaagggctgctggacgcgctggagcgc gagctgcggctgatgaccggcgtgacggtcgatcgtgaagcctggcagtgggaacaggtg cccgatcacctgaaaatgaccttccgggtggtggacgagaaaagccgtgcgctacgggaa ggcaagagtctgcgggcgttgaaagatcagttgcaggagaaggtgcagcaaacgctgtcg gcggtggcggatgacggcatcgaacagcgcgatctgcatatctggagttttggcgatttg ccggagcgttacgagcagaaacgcggcggctacgcggtaaaagcctacccggcgctggtg gatgagaaagacagcgtggcgatacgtctgttcgatacgccgcaccagcagcaacagatg atgtggcgcggtcagcgccgcctgctgttgctgaatatcccctctcccatcaaatatctg cacgaaaagctgcctaacaaggccaagctggggctgtatttcaacccctacggcaaggtg ctggagctgatcgacgattgcatcgcctgcggcgtggaccagttgatgacggtggcgggc ggcccggtgtggcaggaagacgccttccgtcagttgcacgagcgagtacgggcggaactg aacgatacggtggtggatatcgcccggcaggtggagcaaattttaaccacagtattcaat atcaacaaacggctcaaaggtcgggtggatatggcgctggcgttggccttgagcgacatc aaaagccagatgagcgggctggtgttccgcggtttcgtgactgacaacggctggaaacgg ctgccggatgtgctgcgctatctgcaggccatcgagcgtcggctggataaactggcgcag gatgtccatcgcgatcgcgcgcaaatgctgaaagtggagcaggtgcagcaggcctggcag cagtggctgaacaagctgccgccggagcgacgggaagacgacgacgtgaaagcgatccgc tggatgatcgaagaactgcgcgtcagctacttcgcccagcagctcggcacgccttatccg gtttccgataaacgcattttgcaggcgatggcgcagattgagggataa

DBGET integrated database retrieval system