Oleidesulfovibrio alaskensis: Dde_0152
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Entry
Dde_0152 CDS
T00294
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dde
Oleidesulfovibrio alaskensis
Pathway
dde03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dde00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dde_0152
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dde03019
]
Dde_0152
03009 Ribosome biogenesis [BR:
dde03009
]
Dde_0152
Enzymes [BR:
dde01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Dde_0152
Messenger RNA biogenesis [BR:
dde03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Dde_0152
Ribosome biogenesis [BR:
dde03009
]
Prokaryotic type
rRNA helicases
Dde_0152
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ABB36953
UniProt:
Q317E3
LinkDB
All DBs
Position
139068..140654
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AA seq
528 aa
AA seq
DB search
MVEKLLFADLPLSKEVLRAIQDMGFEEASPIQTMSIPHILAGKDVVGQAQTGTGKTAAFG
IPILERIDPRDKATQAVVLCPTRELAIQVAEEVTTLARHKRGISVVPVYGGQPIERQVRA
LRRGAQVIVGTPGRVMDHLDRGTMDINTVKMVVLDEADEMLDMGFRDDIEFILGKMEQEV
QTVFFSATMPRAILDMAQRYLKEPEFLKVTQKLLTVPSIEQIYFEVRPFQKLESLCRVLD
VYNPKLTIVFCSTKVGVDELATNLQARGYDADGLHGNLNQAQRDRVMNRFRKGNIDILVA
TDVAARGIDVENVEAVVNYDIPNDVESYVHRIGRTGRAGRAGRAFTFVSGREFYKLRDIK
RFTKAQIAQRQVPSLSEVENAKFTQMLNEVTNQIRTGGLERYIELVEGIIGEEFTSVEAA
AALLRMMMHRNAGDAVTEEQKFGDTGAQPGMVRLFFNVGRKARVTARDFVGAIAGETGLP
GRMIGSIDIYDRFTFVEVPNEFAAEVLAVMNGNQIRGNKLAVEPASRR
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atggttgaaaaacttcttttcgcagatcttcccctttctaaggaagtgctgcgcgcgata
caggacatgggctttgaggaggcgtctcccatccagacgatgtccatcccgcacatactg
gcgggtaaggatgtggtcggacaggcccagacaggcacgggcaagactgctgcgttcggc
attcccattctcgagcgcattgacccccgtgataaagccacgcaggccgtggtgctgtgt
cctacgcgtgaactggccattcaggtggccgaagaagtgactacactggcccgccacaag
cggggcatcagtgttgttcccgtatacggcggacagcccatcgaacggcaggtccgcgct
ctgcgccgtggtgcgcaggttatcgtgggtacgccgggccgcgtgatggaccacctcgac
agaggaaccatggacatcaataccgtgaaaatggttgtgctggacgaggcggacgaaatg
ctcgatatgggcttccgcgatgacattgaattcattctgggcaagatggagcaggaagta
cagaccgtgttcttttccgccaccatgccccgcgccattctggatatggcgcagcgctac
ctcaaggaaccggagttcctgaaagtcacccagaagctgcttaccgtgcccagcatcgag
cagatatacttcgaggtgcgtcctttccagaagctggaaagtctgtgccgtgtgctggac
gtgtataatcccaagctgaccatcgtgttctgctccaccaaggtgggcgtggacgaactg
gcaaccaatctgcaggcccgcggatatgatgccgacggactgcacggcaacctgaatcag
gcccagcgcgacagggtgatgaaccgcttccgcaaaggaaacattgatattctggtggcc
accgacgtggctgcccgcggtattgatgtggaaaacgtggaagccgtggtcaactacgac
atacccaacgatgtggaaagctatgtgcaccgtatcggccgtacgggccgtgcgggccgt
gcgggccgtgcattcacctttgtgtccggccgcgaattctacaagctgcgcgacatcaag
cgctttaccaaggcgcagatagcacagcgtcaggtaccctcgctttccgaagtggaaaac
gccaaattcacccagatgctcaatgaagtgaccaaccagatacgcaccggcggtctggag
cgctacatagaactggtggaaggcattatcggcgaagagttcacctctgtggaagctgcc
gccgccctgctgcgcatgatgatgcaccgtaacgcaggcgatgccgtgaccgaagagcag
aagttcggtgataccggtgcccagccgggcatggtacgcctgttctttaacgtgggccgc
aaagcccgcgtgacggcacgtgactttgtgggggccattgccggagaaaccggcctgccc
ggacggatgatcggctccatagatatctatgaccggttcacgtttgtggaagtgcccaac
gagtttgccgcagaagtgcttgcagtgatgaacggcaaccagatacgcggcaacaagctt
gccgtggaacctgccagccgccgctga
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