Oleidesulfovibrio alaskensis: Dde_0173
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Entry
Dde_0173 CDS
T00294
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
dde
Oleidesulfovibrio alaskensis
Brite
KEGG Orthology (KO) [BR:
dde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dde03016
]
Dde_0173
Enzymes [BR:
dde01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Dde_0173
Transfer RNA biogenesis [BR:
dde03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Dde_0173
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
ABB36974
UniProt:
Q317C2
LinkDB
All DBs
Position
complement(156038..158134)
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AA seq
698 aa
AA seq
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MSATSPLVQYPGPGCIVEFMQGNKPQIAWVQEEQSGKLRLLTQSKRETKLAAARVMPWAG
PQYGADKSRQEALELLNQHEERRNTRAAALDPLELWELAQGEVQAATAQWFAELLHESPD
ADDIAAMGRVLLECKTHFKFQSPEFEIYDAEKVHARMTEQEARRKREQLASEGHDFLRAL
WETHQKRRTPPCTPEDAGLAAEIEALLRKRIAEPDDHDSEQLWKQISKGLPDVPHLPLLL
AQAWGIVPAHHNFHLDRADYDRSPDWHAPHAQALADLRRRVLAARTEPCGIPFISIDSSS
TRDIDDAFHIEPRADGGHRLRLAIACPALGWEFGSELDKAVMRRATSIYLPEGNLHMLPE
ELGTDFFSLIGQQERPALVMEFDIAPAGQLEATTLKACWVQLAANLSYADCEAVLNGDPG
WDAPDNPAAAFADQLKAGAALSRILLEQRVSCGAVVIERPDPKTTLTGTGADTQVEIEHD
SPTPASCLLVSEMMILANSGIALWAKDRDIALLHRTQDVGVPKEYAGVWDQPHDIARVVK
ALSSAVLETAPRRHSGIGVPAYSPVTSPLRRYPDLVNVAQLIHYLGTGTPRWSRDELDAM
LPLLTARLDAAGQVQRFRPRYWKLLYFKQKGDKTWWDAVVTDENDAFVTVSLPDQQIFVR
GRRSSFGERAHPGTRLMVRIGKVHPLNNEIQILDVMEQ
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgagcgctacctcccctctggtccaataccccggcccgggctgcatcgtcgaattcatg
cagggcaacaagccccagatagcatgggttcaggaagaacagtccggcaaactgcgcctt
ctcacccagagcaagcgggagacaaagctcgcagcggcacgcgtcatgccatgggccggt
ccgcagtacggtgccgacaaatcacgtcaggaagcactggaactgctgaaccagcacgaa
gaacgccgcaacaccagagcggccgcgcttgacccgctggaactgtgggaactggcgcag
ggcgaagtacaggctgccacggcgcagtggtttgccgaactgctgcacgaatcgcccgac
gcagacgacatagccgccatgggccgcgtgctgctggaatgcaagacacatttcaagttt
cagtcgccggagtttgaaatatacgacgcagaaaaagtgcacgcccgcatgaccgaacag
gaagcccgccggaaacgcgaacagctcgcatccgaaggtcatgattttctgcgcgctctg
tgggaaacccatcagaaaagacgcaccccgccctgtacgcctgaagacgccggactggcc
gccgaaattgaagccctgctgcgcaaacgcatcgcagaaccggacgatcacgactcagaa
cagttgtggaaacagatatccaaagggctgccggacgtgccgcacctgcctctgctgctg
gcacaggcatggggtattgtgcccgcccaccataattttcatctggacagggccgattat
gacagatcgcccgactggcacgctccccatgcacaggcactcgcagacctgcgccggcgt
gtgcttgccgcacgcaccgaaccctgcggtattccgttcatcagcatcgattcctcctcc
acgcgtgacattgacgatgccttccatatcgaaccgcgcgccgacggcggccaccgcctg
cggctggccattgcctgccccgctctgggatgggaattcggcagcgaactggacaaagcc
gtcatgcgccgcgccaccagcatatatcttcccgaaggcaatctgcacatgctgccggaa
gagctgggcacggactttttcagtctcataggacagcaggagcggccggctctggtcatg
gaatttgacattgctcccgccggacaactggaagccacaaccctgaaggcgtgctgggta
cagctggccgccaacctgagttatgccgactgcgaagccgtgctgaacggcgatccgggc
tgggacgcccccgacaaccccgccgccgcctttgctgaccagctgaaggccggagccgcg
ctttcgcgcatcttgctggaacaacgggtgtcctgcggggccgtggtcatcgaacgcccg
gaccccaaaaccactcttaccggcaccggagccgacacacaggtggaaattgagcacgac
agccccactccggcatcgtgcctgctggtcagcgaaatgatgatactggccaacagcggt
attgccctgtgggcaaaagaccgtgacatagccctgctgcaccgcacgcaggacgtgggc
gtgcccaaggaatacgccggagtatgggaccagccccatgacatcgcccgcgtggtcaag
gcgctgtcgtccgccgtgctggaaacggccccgcgcaggcattcaggcataggcgtaccc
gcctacagccctgtcacatcgccactgcggcgctatcccgaccttgtcaacgttgcgcaa
ctcatacattatctcggcaccggcactccccgctggtcgcgcgacgagcttgatgccatg
ctgccgctgctcaccgcacggctggatgccgcagggcaggtacaacgtttccgcccaaga
tactggaaactgctgtacttcaagcagaaaggcgataaaacgtggtgggacgcagtggtg
acggacgaaaacgatgcctttgtcaccgtgtcgctgcccgatcagcagatttttgtgcgc
ggacgcaggtcctctttcggcgaaagggcgcaccccggtaccagacttatggtgcgcatc
ggcaaagtgcatccgcttaacaacgagatccagatactggacgtcatggaacaatag
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