Oleidesulfovibrio alaskensis: Dde_0537
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Entry
Dde_0537 CDS
T00294
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dde
Oleidesulfovibrio alaskensis
Pathway
dde03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dde00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dde_0537
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dde03019
]
Dde_0537
03009 Ribosome biogenesis [BR:
dde03009
]
Dde_0537
Enzymes [BR:
dde01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Dde_0537
Messenger RNA biogenesis [BR:
dde03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Dde_0537
Ribosome biogenesis [BR:
dde03009
]
Prokaryotic type
rRNA processing factors
Dde_0537
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF5351
Motif
Other DBs
NCBI-ProteinID:
ABB37338
UniProt:
Q315Q8
LinkDB
All DBs
Position
complement(547672..549132)
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AA seq
486 aa
AA seq
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MEKTRKGKRKMFISVLPEEQVEVVLSEEGVIVEYYVEMVHQAKTKGNIYKGIINNIDSNL
QAAFVNYGAEKNGFLQVDEVHPEYYSAPHDPSKGKKYPLLQKVLKAGQEVLVQVVKEPTG
SKGAFLTSYLSLPGRFLVLTPGREQIGVSRKVESEEERVRLRALLEGATPGPGLGLIVRT
VSVGQSKTSIQRDLQFLKRLWKDVRKKGTVEKAPSLIYKELDLAARAVRDYLTDDVGEVW
VDDEQTADAVQEFAAIVFPRRTNLVKRHKDTDRTLWERFSMQKQLDQIYSREVSLPSGGR
LVFDQTEALMAIDINSGKIAGKTNFESMALRTNMEAAETIAQQLKLRDIGGQIVVDFIEM
RDRNHWREVEKTLRAAMKNDRARHDVGKMSRFGLLQIVRQRLGSSALSISTEPCPCCKGT
GLRRNMEWQAMQALKDIHRQLRATTASSLRWEAPEELGMYLLNHKRGHLTELENRFERDI
DIAIRR
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagacccgcaagggcaaacgcaagatgttcatcagcgtgctgcccgaagaacag
gttgaagttgttctctctgaagaaggcgtaattgttgaatattatgtagagatggtgcat
caggccaagaccaaaggcaacatctacaaaggcatcatcaacaacatagactccaacctg
caggccgcctttgtcaattacggcgccgaaaaaaacggttttctgcaggtggatgaagtt
caccccgaatactactcggccccccacgacccttccaaaggcaaaaaatatcctctgctg
cagaaagtgcttaaagcaggacaggaagtactggtgcaggtggtcaaggaacccacgggt
tccaaaggtgccttcctcacctcgtatctttcgctgccgggacgttttctggtgctcacc
cccggacgcgaacagataggcgtttcgcgcaaggtggaatcggaagaagaaagagtgcgc
ctgcgcgccctgcttgaaggtgccacccccggtcccgggctggggcttatcgtacgcacg
gtttcggtggggcagagcaaaacaagcatacagcgcgacctgcagtttcttaaacgcctg
tggaaggatgtgcgcaaaaaaggcaccgtggaaaaagcccccagccttatctacaaggaa
ctggaccttgccgcacgggcagtgcgcgactatctgaccgacgatgtgggcgaagtgtgg
gtggacgacgaacagacagccgatgccgtgcaggaatttgccgccatcgtctttccgcgg
cgcaccaatctggtcaaacggcataaagacaccgaccgcacactctgggagcggttcagc
atgcagaagcagctggaccagatatattcgcgcgaagtatcgctgcccagcggcggcagg
ctggttttcgaccagaccgaagcgcttatggccatcgatatcaactccggaaaaatcgcc
ggcaagacaaatttcgaatccatggctctgcgcaccaatatggaagccgccgaaaccatc
gcccagcagctcaagctgcgtgacatcggcgggcagatagttgtcgacttcattgaaatg
cgcgacagaaaccactggcgcgaagtggaaaaaaccctgcgcgccgccatgaaaaacgac
cgcgccagacacgatgtgggcaaaatgagccgtttcggcctgctgcagatagtgcggcag
cgtctggggtcttccgccctgtccataagcaccgaaccctgcccgtgctgcaaaggcaca
gggctgcgccgcaacatggaatggcaggccatgcaggccctgaaggatatccacagacag
ctgcgcgccaccacggcctcttcgctgcgctgggaagctccggaagaactgggcatgtac
ctgctgaaccataaacgcggacacctgaccgaactggaaaacaggttcgaacgcgacatc
gacatcgccatacggaggtag
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