Oleidesulfovibrio alaskensis: Dde_0978
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Entry
Dde_0978 CDS
T00294
Name
(GenBank) 2,3 cyclic-nucleotide 2-phosphodiesterase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
dde
Oleidesulfovibrio alaskensis
Pathway
dde03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dde00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dde_0978
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dde03019
]
Dde_0978
Messenger RNA biogenesis [BR:
dde03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Dde_0978
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
KH_2
Motif
Other DBs
NCBI-ProteinID:
ABB37779
UniProt:
Q313W7
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All DBs
Position
complement(1005754..1007313)
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AA seq
519 aa
AA seq
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MGLIEIVLLLVGMAVGAATGFILHKIVSAKRLQDARELADRIIEEARKEAQAHKKEVLIQ
GQDELFNQKRELEREFKEREHELKIRERRLQEQTERLEEKLEKLAQKEHDALSVEKELNR
RERTLGLKEEELTQKIAEQDKKLQEISGLTSEEAKARIFSEVEARTRHEAGKMIRVIETE
AKETASRSAQKILATAVQRYAGDFVNEQTVTAVSLPSEDMKGRIIGREGRNIRALEAATG
VDLIIDDTPETVILSAYSPLRRQIAKMALERLISDGRIHPARIEDIVRKCEQELEVQLRE
VGEQATFDVGVHGIHPEIIKLLGQLKYRTSFSQNVLQHSMEVASLCGIMAAELGMDEKRA
KRAGLLHDIGKAVDHDVEGPHAVIGADLAKKYGESKDIIHAIAAHHEDVPPKSALAVLVQ
AADSLSGARPGARKELLENYVKRLEDLEGIANGMEGVSKAYAIQAGREIRVLVNSDEVDD
DTTYMLCKDISEKIEKNLTYPGQIRVTVIRERRAVGVAK
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgggccttatagaaatagtactcctcctcgtcggcatggcagtcggggcagccacaggc
ttcatactgcacaaaatagtcagcgccaaacgtctgcaggacgcccgcgaactggccgac
cgcattatcgaggaggcacgcaaagaggcacaggcgcacaaaaaggaagtgctcatccag
gggcaggatgaactctttaaccagaaacgtgaactcgaacgcgaatttaaagaacgcgaa
cacgaactgaaaatccgtgaacgcaggctgcaggaacagaccgaacggcttgaagaaaaa
ctggaaaagctggcccagaaagaacacgatgctctttctgtggaaaaagaactgaacagg
cgcgaacgcactctggggcttaaggaagaggaactgacccagaaaattgcggagcaggat
aaaaagcttcaggaaatatccggtctgacatctgaagaagccaaggcgcgcattttcagc
gaagtggaggcaagaacccgccacgaagccggaaagatgatccgcgtcatagaaacagaa
gccaaggagaccgcttcgcgcagtgcccagaaaattctggccacagctgttcagcggtat
gccggcgactttgtcaacgaacagaccgttaccgcagtctcgctgcccagcgaagacatg
aaaggccgcatcataggccgcgaaggacgcaacatccgtgcgctggaagcagccaccggc
gttgatctgatcattgacgacactccggaaacggtcatcctttccgcctacagccctctg
cgcaggcagattgccaaaatggcactggaaaggctgatcagcgacggacgtatccacccc
gcacgcattgaagacattgtacgcaagtgtgagcaggagctggaagtgcagctgcgcgaa
gtgggcgaacaggctacctttgacgtgggcgtgcacggcatacatcccgaaatcatcaaa
ctgctggggcagctcaaataccgcaccagcttttcgcagaatgtgcttcagcactccatg
gaagtcgcatcgctgtgcggcattatggctgcagaactgggcatggacgaaaaacgcgcc
aagcgcgcggggctgctgcacgacatcggcaaagcagtggaccacgatgtggaaggtccg
catgccgtcatcggagccgatctggcaaagaaatacggcgaatccaaggacattatccac
gccatagcagcccaccacgaagatgtgccgcccaaaagcgctctggctgtgctggtgcag
gccgcagacagcctttccggtgcacgccccggtgcgcgcaaggaattgctggaaaattac
gtgaagcggcttgaagaccttgaaggtatagccaacggcatggaaggggtttccaaagcc
tacgccattcaggcaggccgcgaaatccgcgttcttgtcaattccgatgaagttgacgac
gacacaacatacatgctgtgcaaagacatctcggaaaaaatcgagaaaaacctcacctat
cccggccagatccgcgttaccgtcatccgggaacgccgcgccgtgggtgtggccaaatag
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