Oleidesulfovibrio alaskensis: Dde_2486
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Entry
Dde_2486 CDS
T00294
Name
(GenBank) excinuclease ABC, A subunit
KO
K03701
excinuclease ABC subunit A
Organism
dde
Oleidesulfovibrio alaskensis
Pathway
dde03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Dde_2486
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dde03400
]
Dde_2486
DNA repair and recombination proteins [BR:
dde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Dde_2486
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Dde_2486
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrA_inter
ABC_tran
SMC_N
UvrA_DNA-bind
AAA_21
AAA_16
AAA_29
AAA_25
AAA_23
nSTAND1
AAA_15
RsgA_GTPase
AAA_33
AAA_22
nSTAND3
DnaJ_CXXCXGXG
AAA_18
NACHT
A24_N_bact
BCA_ABC_TP_C
ScfRs
Zn_ribbon_3
Motif
Other DBs
NCBI-ProteinID:
ABB39283
UniProt:
Q30YG3
LinkDB
All DBs
Position
complement(2505290..2508070)
Genome browser
AA seq
926 aa
AA seq
DB search
MSKPCIHIEGARQHNLKNLTLDIPRDELVVVCGPSGSGKSTLAFDLVYAEGQRRYVESLS
AYARQFLPQMDKPDVDKIEGLSPAISLEQQSTSRNPRSTVGTVTEVYDFLRVFYARLGMM
YCPKCGKPIAARAADEIIADILSMEQGTKFMVMAPLVEHQKGTHADRLKRLKAQGFVRIR
LNGEVMTLDEVPALEKNKKHSIDLVVDRLVLKDGIRGRLADSVELALRFGEGRLIVSIPG
GAEQVHSTESVCPTCKLSLPPLSPQLFSFNSPQGACPRCSGIGSIDYFEPNLLAPNKGLS
LVSGGLLPWKNPKVFERYKPALEALGKELGFAADTPFREYSEKAWNALFHGEKETGWPGV
VLLLERGMQLGSQWRDELSRYRQSHPCPACDGARLKPEALAVRVDDLNISQFCSLSITRA
LEWLRGRDFRQSQAVIAEPLLKELTHRLGFMENVGLDYISLGRNMSTLSGGEAQRIRLAS
QLGSGLVGVTYVLDEPSIGLHPKDNERLIRTLRSLQKRGNTVLVVEHDEATILEADTVVE
LGPGSGMLGGEIVFNGSVKSLLSDSDSLTARYLRGEMTIPLPEKRRQGSGSIVLRGVTTN
NLQDIDCEIPLGALTCVTGPSGSGKSSLVVDSLYKHIALHQSIKVDSPGQIRGIDGLENI
ERLVAIDQTPIGRTPRSNPATYTKIFDEIRNIFAMTPDARKRGYKPGRFSFNVRGGRCEA
CGGDGQIRVEMHFLPDIYVTCDVCGGKRYNHETLEVRYKGMNIADVLGMTVRQAKAFFEN
YPALERRLAVLEDVGLEYLRLGQPATTLSGGEAQRIKISRELGKRSLPGTLYILDEPTTG
LHMHEVGKLIRVLHQLVDRGATVVVIEHNTDVIMAADTVIDLGPGGGEYGGRIVSSGTPE
EIMADPASVTGSFLKHEAVAVKAAGR
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaccctgcattcatatagaaggtgcccgtcagcacaacctgaaaaacctgacg
ctggatattcccagagacgaactggtcgtagtctgcggtccgtccggttcgggcaaatcc
acccttgcgttcgaccttgtctatgccgaagggcagcggcgttatgtggaatcgctttcc
gcctatgcgcgtcagtttctgccccagatggacaagcctgatgtggataagatcgagggg
ttgtctccggccatatcgctggaacagcagtccacttcgcgtaacccgcgttccacagtg
ggaacagtgaccgaggtgtacgactttctgcgtgttttttatgcccggctgggcatgatg
tattgccccaagtgcggcaagcccattgccgcgcgtgccgcggacgagatcatcgccgat
attctgtccatggagcagggcaccaagttcatggtcatggcgcctttggtggaacaccag
aagggaacgcatgcagacaggcttaaaaggctgaaagcacaaggctttgtgcgtatccgg
ctgaacggcgaagttatgacgctggacgaggtgccggctcttgaaaaaaacaaaaagcat
tccattgatctggtggtggaccggctggtgcttaaagacggcatacggggacgccttgcg
gattctgtggaactggctctgcgttttggcgaggggcgacttatcgtcagtattcccggc
ggggcagaacaggtgcacagcaccgaatctgtgtgtcccacctgcaagctcagcctgccg
ccgctcagcccgcagcttttttcattcaacagcccgcaaggggcgtgtccgcggtgttcc
ggtataggcagcatcgattatttcgagcccaatcttctcgcccccaacaagggcctgtcg
cttgtgtccggcggcctgctgccgtggaaaaaccctaaagtattcgagcggtacaagcct
gctcttgaagcgttgggcaaagaactggggtttgctgccgacacgccgtttcgcgagtat
tccgaaaaggcgtggaatgcattgtttcacggagaaaaagagaccggctggccgggagtg
gttctgctgctggaaaggggaatgcagctgggcagccagtggcgtgacgaactttcgcgg
taccggcagtcgcatccgtgtccggcatgtgacggcgcgcggctgaaaccggaagcgctg
gccgtccgagtggacgatctgaatatttcgcagttctgctcattgtccataacccgtgcg
cttgaatggctgcgcgggcgtgatttcagacaatcgcaggcggtcattgccgagccgctg
ctcaaggaactgactcaccgcctcgggttcatggagaatgtggggcttgattatatttcg
ctgggccgcaacatgtccaccctgtccggcggagaagctcagcgcatcaggctggcttcg
cagctgggatccggtctcgtgggggttacctatgtgctggacgaaccctccatcggcctg
caccccaaggataatgagcggctcatccgtacgctgcgcagtctgcagaagaggggcaat
accgtacttgtggtggaacacgacgaagccaccattctggaagccgacacggtggtggaa
ctgggccccggttcgggaatgctcggcggcgaaatagtgttcaacggcagtgtgaagtcg
ttgctgagcgattcggattcgctgacggcccgctatctgcggggcgagatgaccatcccg
ctgccggaaaaacggcggcagggcagcggcagcattgtcctgcgcggggtgaccaccaac
aatctgcaggatatcgattgtgaaattcctctgggggcgcttacctgcgtcaccggtcct
tccggatcgggcaaaagctcgcttgtggttgattcgctgtacaagcatatcgcactgcat
cagtccatcaaagtggacagccccgggcagatacggggcatagacgggctggagaacatc
gaacggctggtggccatcgaccagacgcccatcgggcgtactccacgctccaaccccgcc
acctacacaaagatatttgatgaaatccgcaatatttttgccatgacgcccgatgcccgc
aaacgcggttacaaaccggggcggttcagcttcaacgtgcgcggcgggcggtgcgaagcc
tgcggcggcgacgggcagatacgtgtggagatgcattttctgcccgatatctatgtgacc
tgcgatgtgtgcggtggcaagcgctataaccatgaaacgcttgaagtccgttacaagggt
atgaacattgccgatgtgctgggcatgactgtgcgtcaggcaaaggcgttttttgaaaat
taccctgcgcttgaaagacggcttgccgtgcttgaggatgtggggcttgaatatctgcgg
ctggggcagcctgccaccacgttgtccggcggcgaggcccagcggatcaagatttcgcgg
gaactgggcaaacgcagtctgcccggcacgctgtatattcttgacgaaccgacaacaggt
ctgcacatgcacgaggtcggcaaacttatccgggtgctgcatcagctggtggacagaggc
gccacggtggttgtcatcgagcataacaccgatgtcatcatggcggcggacactgtcatc
gatctggggccgggcgggggtgaatacggggggcgtatcgtttccagcggtactcccgaa
gaaatcatggccgatccggcttctgttacaggaagttttttgaagcacgaggccgtggcg
gtcaaggcggcagggcgctag
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