Oleidesulfovibrio alaskensis: Dde_3167
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Entry
Dde_3167 CDS
T00294
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
dde
Oleidesulfovibrio alaskensis
Pathway
dde03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dde00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dde_3167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dde03019
]
Dde_3167
03016 Transfer RNA biogenesis [BR:
dde03016
]
Dde_3167
Enzymes [BR:
dde01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Dde_3167
Messenger RNA biogenesis [BR:
dde03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Dde_3167
Transfer RNA biogenesis [BR:
dde03016
]
Prokaryotic type
tRNA degradation factors
Dde_3167
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH-I_KHDC4-BBP
KH_2
CsrA
KH_NusA_2nd
OB_RRP5_4th
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
ABB39961
UniProt:
Q30WI5
LinkDB
All DBs
Position
3154355..3156607
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AA seq
750 aa
AA seq
DB search
MENLFGAKRLTATVGGKEIIMETGRLANQADGAVWIQCGGTVVLCTVCTQPLEREISFFP
LVVDYTEKMYAAGRIPGSFFRREIGRPSERETLVSRLIDRPLRPLFPKGFTNEVQILANV
ISADQENDSDVLALCGSSAAVMLSSVPFEAPVAGARVCRIDGEFVLNPTITEAAKADLNL
VVAANRDALVMVEGEADFVPEEVIAQALEWAHREVQPIIDMQEKLRELAGKAKIEFVAPE
EDTELKEKAEALATADLAAALQVREKMARKEAKKAVKEKVKAALLQDPAFAETPERLAAL
GDILSSLEKRIVRQRILKEGLRIDGRDTKTVRPIIIEAGALPRAHGSAIFSRGETKSLVV
TTLGSTTDEQRMDSLTGDVTKRFMLHYNFPPYSVGEVKPVRVSRREIGHGALAERALRPV
LPSPDSFPFTLRVVSETMESNGSSSMAAVCGGSLSLMDAGVPVKAPVAGIAMGLIKEDDQ
FIVLTDILGDEDALGDMDFKIAGTAEGVTAVQMDIKIDGLPAEVMGRALAQAREARLHIL
NEMAKVLPEPRQALSKYAPQLSVVEVNPEIIRVIIGPGGKNIKAITSATGASIDIEDSGR
ISIFAPTKESMDMAREMVMYYDQRPELGKNYTAKVRKIMEIGAIVEILPNCEALIHISQL
DTSRVEKTEDVVQLGQDVEVKVIEINDGRVRASRKAVMLEAQGVEWDPADTARPPRKPRD
RDDRGDRGGRGDRGDRGGRNGRGGDRRDRR
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatctcttcggcgccaagcgcctcaccgccaccgtgggcggtaaagaaatcatc
atggaaaccgggcgactggccaatcaggccgacggcgcggtttggattcagtgcggcggc
accgttgtgctgtgcaccgtgtgcacgcagccgctggaacgcgaaatcagcttctttccg
ctggttgttgactacaccgaaaagatgtacgcggcaggccgcattcccggcagctttttc
cgccgcgaaataggccgccccagcgagcgcgaaactcttgtttcccgcctcatcgaccgt
cccttgcgtccgctgttccccaagggtttcaccaacgaagtccagattctggccaatgtc
atttccgccgatcaggaaaatgactccgacgtgctggcgctgtgcggttcctccgccgcc
gtcatgctgtccagtgtcccctttgaagctcccgtggccggtgcccgcgtctgccgcatc
gacggcgaatttgtgcttaaccccaccatcaccgaagcggcaaaggccgacctcaacctt
gttgtggccgccaaccgcgacgctctggtcatggttgagggcgaagccgacttcgtgccc
gaagaagtgattgcgcaggctctggaatgggcgcaccgcgaagtgcagcccatcatcgac
atgcaggaaaagctgcgcgaactggcaggcaaggccaaaatcgagttcgtggctcctgaa
gaagacactgaactgaaggaaaaggccgaagcccttgccaccgcagatctggcagccgca
ctgcaggtcagggaaaaaatggcccgcaaggaagccaaaaaggccgtaaaggaaaaagtg
aaggccgccctgctgcaggaccccgcctttgccgaaactcccgaacgccttgccgctctg
ggcgatattctgagcagccttgaaaaacgcatcgtgcgccagcgcatactcaaagaaggc
ctgcgcatcgacggccgcgacaccaaaaccgtgcgccccatcatcatcgaagcaggtgcc
ctgccccgcgcacacggttcggctattttctcgcgcggcgagaccaaaagccttgtggtg
accactcttggcagcaccaccgacgaacagcgcatggactcccttaccggtgacgtaacc
aagcgcttcatgctgcattacaacttcccgccctattcggtgggtgaagtgaagcccgtg
cgcgtttcccgccgcgaaatcggtcacggtgcgctggcagaacgcgctctgcgccccgta
ctgccctcgcccgacagcttccccttcacactgcgcgtggtttccgaaaccatggaatcc
aacggctcgtcctccatggccgcagtatgcggcggcagcctttcgctgatggacgccggt
gtgcccgtcaaggctccggtggccggcattgccatgggtctcatcaaggaagatgaccag
ttcatcgttcttaccgacattctgggtgatgaagacgctctgggcgatatggacttcaaa
atcgccggcaccgcagaaggcgtcaccgccgtgcagatggacatcaaaatcgacggcttg
cccgccgaagtgatgggccgcgcactggctcaggcccgcgaagcacgtctgcacattctg
aatgaaatggccaaggtgctgcccgagccgcgtcaggcgctttccaaatacgctccccag
ctgagcgtggtggaagtgaaccccgaaatcatccgcgtgatcatcggccccggcggtaaa
aacatcaaagccatcacctcggccacgggtgcatccatcgacatcgaggacagcggcaga
atctccatttttgcccccaccaaagagtccatggatatggcccgcgaaatggtcatgtac
tacgaccagcgccccgaactgggtaaaaactacaccgcaaaagtccgcaagatcatggag
atcggcgccattgtggaaattctgcccaattgtgaagcgctgattcacatctcgcagctg
gacacctcgcgcgtggaaaaaaccgaggacgttgtgcagctgggacaggacgtggaagtc
aaggtcatcgagatcaatgacggacgcgtacgcgcctcgcgcaaggcagttatgctggaa
gcgcagggcgtggaatgggatccggccgacaccgcacgccccccgcgcaaaccccgcgac
cgtgacgaccgcggagaccgcggcggacgcggcgaccgtggtgaccgcggcggacgcaac
ggacgcggcggcgatcgtcgcgaccgtcgctaa
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